Click here to switch to the map view.

The map label for this gene is 29142969

Identifier: 29142969

GI number: 29142969

Start: 2672322

End: 2673146

Strand: Direct

Name: 29142969

Synonym: t2594

Alternate gene names: NA

Gene position: 2672322-2673146 (Clockwise)

Preceding gene: 29142968

Following gene: 29142970

Centisome position: 55.77

GC content: 59.52

Gene sequence:

>825_bases
ATGAAAAAAACTGACACGCTTCCTGCTACCCTGTCCGCGCTGCTACAGGAATACTCTATTGCGGAGGGGATTCAGATGGC
GGAGCAGCAGGTTCGGGAAAATCCGGCGAAGGCGCTCTGCCGCCACAGCCTGTTTCAGTTGCTGTGTGTGGCCGGAGACT
GGGCGCGGGCGCTACACCAGCTTCAGCTCTGTGCCAGGATGGAGGCAAATTATACCCAGGAGGCCCGGCTGTACCGGGAG
CTGGTTTGCTGCGAAATGTTCCGCCACACCGTTTTTCAGGGTGAACAACGACCCGGTTTTCTTCTGCCGCAGCCCGTTTG
GGTGGAGTCACTGCTGGCGGCACTCGCCTGTCATGACGATACCGGTGAGGTTGATAAACACCGTAATACCGCACTGGAAG
CCATAACAGACACGGGCGGGCAGTGGAACGGCGGCGCATTTGACTGGGCGAGCGACAGCGATTCCCGCCTTGGCCCGGTA
CTTGAGCTGGTCACCGGCGGCGTGTATATCTGGCTACCGTTTTCGCAAATACGCTCGCTGGAATCGCCGCAACCGACGCG
CCTGACCGATCTGCTGTGGAAACCCGTTAATATCACCCTGGTGAATGGCGATACGCACGGTGCCTGGCTCTTTACCCGTT
ACAGCGGTTCGGAAAGTGCATCTGACGCCCTGCGTCTGTGCCGGGAAACCGCCTGGCAGGACGGCCCCGGCGAAACCACC
GTGCGAGCGCTGGGGCAGAAAGTGTGGCTGACCAGCCACGGCGATATCAGCCTGCTGGACATGACCCATTGTACCTTTCA
TGCTCAGGAAAACGATGGCGCATGA

Upstream 100 bases:

>100_bases
AGCGAGATACTGCCCGATCTGACCCGCCGCGAGCATCGTATTATTGGCATCGATAGCCACTACCGAATCACTCCGACACA
GAAAAATGGAAATACCGCCC

Downstream 100 bases:

>100_bases
GCACGTCTCGTTTTACACCCGCTAACCACCTGCTGCCTACGCTGTTTGATCGGCTGTGTGACAATGCTCCGTATCAGAAA
ATTGACCGGGATATCAGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: ImpE Family Protein; Cytoplasmic Protein; Type VI Secretion System Protein ImpE; ImpE-Like Protein; ImpE Protein Superfamily Protein; Secretion Protein; Virulence-Island/Protein Involved In Nitrogen Fixation; Virulence Protein SciE Type Family Protein; ImpE Protein; Cytoplasmic Protein SciE; Protein Of Avirulence Locus ImpE; ImpE Family T6SS E

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MKKTDTLPATLSALLQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWARALHQLQLCARMEANYTQEARLYRE
LVCCEMFRHTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV
LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
VRALGQKVWLTSHGDISLLDMTHCTFHAQENDGA

Sequences:

>Translated_274_residues
MKKTDTLPATLSALLQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWARALHQLQLCARMEANYTQEARLYRE
LVCCEMFRHTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV
LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
VRALGQKVWLTSHGDISLLDMTHCTFHAQENDGA
>Mature_274_residues
MKKTDTLPATLSALLQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWARALHQLQLCARMEANYTQEARLYRE
LVCCEMFRHTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV
LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
VRALGQKVWLTSHGDISLLDMTHCTFHAQENDGA

Specific function: Unknown

COG id: COG4455

COG function: function code R; Protein of avirulence locus involved in temperature-dependent protein secretion

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30528; Mature: 30528

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTDTLPATLSALLQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWARALHQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHH
LQLCARMEANYTQEARLYRELVCCEMFRHTVFQGEQRPGFLLPQPVWVESLLAALACHDD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC
TGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPVLELVTGGVYIWLPFSQIRSL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHCC
ESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
CCCCCCHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHH
VRALGQKVWLTSHGDISLLDMTHCTFHAQENDGA
HHHHCHHEEEECCCCEEEEEEEEEEEECCCCCCC
>Mature Secondary Structure
MKKTDTLPATLSALLQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWARALHQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHH
LQLCARMEANYTQEARLYRELVCCEMFRHTVFQGEQRPGFLLPQPVWVESLLAALACHDD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC
TGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPVLELVTGGVYIWLPFSQIRSL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHCC
ESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
CCCCCCHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHH
VRALGQKVWLTSHGDISLLDMTHCTFHAQENDGA
HHHHCHHEEEECCCCEEEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA