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The map label for this gene is yafV [H]

Identifier: 29142924

GI number: 29142924

Start: 2619279

End: 2620046

Strand: Direct

Name: yafV [H]

Synonym: t2542

Alternate gene names: 29142924

Gene position: 2619279-2620046 (Clockwise)

Preceding gene: 29142923

Following gene: 29142925

Centisome position: 54.66

GC content: 53.78

Gene sequence:

>768_bases
GTGTCTGGTTTGAAAATTACTCTGTTGCAACAACCTTTAGTCTGGATGGACGGCCTGGCAAACCTGCGTCATTTTGACAG
ACAGCTAGAGCTCGTATCTGGCCGGGATGTGATTGTTCTGCCTGAAATGTTTACCACCGGCTTCGCGATGGAGGCCGCTA
ATAACTCACTTTCGCAAGATAGCGTGATTACGTGGATGCAGGCCAAAGCCCGACAAACTGACGCTCTGATTGCCGGCAGC
GCGGCGCTACAAACTGAGCGCGGCGCCGTAAATCGCTTCTTACTGGTTGAACCGGAAGGCAAAGTTCATCTCTATGATAA
GCGCCATCTGTTTCGTATGGCGGATGAACATCAACATTATGCCGCAGGCGATAAACGCATCATCGTGCAGTGGCGCGGTT
GGCGCATCCTGCCGTTGATCTGTTACGATCTGCGCTTTCCGATATGGTCGCGCAACCGCAATGATTACGATCTGGCGCTG
TATGTAGCGAACTGGCCCGCGCCGCGCTCGCTACACTGGCAAACATTACTGACGGCGCGCGCTATTGAAAATCAGGCTTA
TGTCGCAGGCTGCAACCGGGTTGGCACCGATGGCAACGGGTTACATTATCGCGGCGATAGCCGAATCATTAATCCCCAGG
GCGACATTATCGCCACCGCCGAACCACACCAGGCGACACGTATCGATGCAGATCTTTCTCTCGTCGCCTTGCAGGACTAT
CGCGAAAAATTTCCAGCCTGGCGCGATGCCGATCCATTCACCTTGTAA

Upstream 100 bases:

>100_bases
GTGTCTTTCCTGCCCCGCTTTCGCGGGGCTTTTTCTTGCCGCTTTTTTATTATTGCTCATGCTACAGTGTAAAGACGCTG
TTCAATGAGGAGCTCCGATC

Downstream 100 bases:

>100_bases
GCAACCTGCCGCTCACCGCGGCGGGATTGTTTCACTCCGTAACTCTCCGTAAAACAAATTCGCGTGGCGTAATGTGGCAG
GCAACGTATTCTGACTAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSGLKITLLQQPLVWMDGLANLRHFDRQLELVSGRDVIVLPEMFTTGFAMEAANNSLSQDSVITWMQAKARQTDALIAGS
AALQTERGAVNRFLLVEPEGKVHLYDKRHLFRMADEHQHYAAGDKRIIVQWRGWRILPLICYDLRFPIWSRNRNDYDLAL
YVANWPAPRSLHWQTLLTARAIENQAYVAGCNRVGTDGNGLHYRGDSRIINPQGDIIATAEPHQATRIDADLSLVALQDY
REKFPAWRDADPFTL

Sequences:

>Translated_255_residues
MSGLKITLLQQPLVWMDGLANLRHFDRQLELVSGRDVIVLPEMFTTGFAMEAANNSLSQDSVITWMQAKARQTDALIAGS
AALQTERGAVNRFLLVEPEGKVHLYDKRHLFRMADEHQHYAAGDKRIIVQWRGWRILPLICYDLRFPIWSRNRNDYDLAL
YVANWPAPRSLHWQTLLTARAIENQAYVAGCNRVGTDGNGLHYRGDSRIINPQGDIIATAEPHQATRIDADLSLVALQDY
REKFPAWRDADPFTL
>Mature_254_residues
SGLKITLLQQPLVWMDGLANLRHFDRQLELVSGRDVIVLPEMFTTGFAMEAANNSLSQDSVITWMQAKARQTDALIAGSA
ALQTERGAVNRFLLVEPEGKVHLYDKRHLFRMADEHQHYAAGDKRIIVQWRGWRILPLICYDLRFPIWSRNRNDYDLALY
VANWPAPRSLHWQTLLTARAIENQAYVAGCNRVGTDGNGLHYRGDSRIINPQGDIIATAEPHQATRIDADLSLVALQDYR
EKFPAWRDADPFTL

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1786412, Length=255, Percent_Identity=81.9607843137255, Blast_Score=448, Evalue=1e-127,
Organism=Caenorhabditis elegans, GI17556280, Length=182, Percent_Identity=31.3186813186813, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323383, Length=269, Percent_Identity=21.9330855018587, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010
- InterPro:   IPR001110 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: 3.5.-.- [C]

Molecular weight: Translated: 29079; Mature: 28948

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50263 CN_HYDROLASE ; PS01227 UPF0012

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLKITLLQQPLVWMDGLANLRHFDRQLELVSGRDVIVLPEMFTTGFAMEAANNSLSQD
CCCCEEEEECCCHHHHHHHHHHHHHHHHEEEECCCCEEEECCHHHCCEEEECCCCCCCCC
SVITWMQAKARQTDALIAGSAALQTERGAVNRFLLVEPEGKVHLYDKRHLFRMADEHQHY
HHHHHHHHHCCCCCEEEECCHHHCCCCCCCCEEEEECCCCCEEEECCHHHHHHHHCCCHH
AAGDKRIIVQWRGWRILPLICYDLRFPIWSRNRNDYDLALYVANWPAPRSLHWQTLLTAR
CCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHH
AIENQAYVAGCNRVGTDGNGLHYRGDSRIINPQGDIIATAEPHQATRIDADLSLVALQDY
HHCCCEEEEECCCCCCCCCCEEEECCCEEECCCCCEEEECCCCCCEEECCCEEEEEEHHH
REKFPAWRDADPFTL
HHHCCCCCCCCCCCC
>Mature Secondary Structure 
SGLKITLLQQPLVWMDGLANLRHFDRQLELVSGRDVIVLPEMFTTGFAMEAANNSLSQD
CCCEEEEECCCHHHHHHHHHHHHHHHHEEEECCCCEEEECCHHHCCEEEECCCCCCCCC
SVITWMQAKARQTDALIAGSAALQTERGAVNRFLLVEPEGKVHLYDKRHLFRMADEHQHY
HHHHHHHHHCCCCCEEEECCHHHCCCCCCCCEEEEECCCCCEEEECCHHHHHHHHCCCHH
AAGDKRIIVQWRGWRILPLICYDLRFPIWSRNRNDYDLALYVANWPAPRSLHWQTLLTAR
CCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHH
AIENQAYVAGCNRVGTDGNGLHYRGDSRIINPQGDIIATAEPHQATRIDADLSLVALQDY
HHCCCEEEEECCCCCCCCCCEEEECCCEEECCCCCEEEECCCCCCEEECCCEEEEEEHHH
REKFPAWRDADPFTL
HHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]