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The map label for this gene is yafK [H]

Identifier: 29142920

GI number: 29142920

Start: 2614266

End: 2615006

Strand: Direct

Name: yafK [H]

Synonym: t2538

Alternate gene names: 29142920

Gene position: 2614266-2615006 (Clockwise)

Preceding gene: 29142916

Following gene: 29142923

Centisome position: 54.56

GC content: 48.04

Gene sequence:

>741_bases
ATGCGTAAAATCGCATTTTTTCTTGCGATGCTTCTGATGCCGTGCGTCTCATTTGCCGGTTTGCTGAGCAGCAGCAGCCC
CGTCACGCCGGTCAGTAAAGAGTATAAGCAGCAGTTAATGGGCTCACCGGTCTATATTCAAATTTTTAAAGAAGAGCGCA
CCCTTGATCTCTACGTCAAAATGGGTGAGCAATACCAGTTGCTTGATAGCTACAAAATTTGCAACTATTCCGGCGGGTTA
GGCCCGAAACGCCGTCAGGGCGATTTTAAAAGTCCGGAAGGGTTTTACAGCGTTCAGCGTAATCAACTCAAGCCAGACAG
CCGTTTTTATAAGGCCATCAACATTGGTTTTCCCAATGCCTACGATCGCGCGCATGGCTATGATGGTAAATATCTGATGA
TTCACGGTGCCTGTGTTTCCGTCGGCTGCTATGCCATGACCGACAGCGGCATTGATGAGATTTTCCAGTTTGTCACCGCC
GCGCTGGTCTTTGGTCAGCCAAGCGTACAGGTGAGTATTTATCCGTTCCGGATGACCGACGCCAATATGCAGCGTCATAA
ATATTCATATTACAAAGATTTCTGGGCGCAGCTAAAACCCGGCTACGATTATTTTGAACAGACGCATAAGCCGCCAACTG
TTTCTATCGTTGATGGACGTTACGTCGTGAGCAAACCGTTGAGTCACGAAGTCGTTCAGCCACAGCTGGCCTCAAATTAT
ACGCTCTCCGAGGCAAAATAA

Upstream 100 bases:

>100_bases
CCGTGGTGCTAATGTGAGCGCTCCAAATCCAGATTACTCCGATTTGGGGACTCTTTTGCCGTTCTGGCGTGTGTAACCGT
TTTATCAAGGAACAAGCAGT

Downstream 100 bases:

>100_bases
CGCCCATTCGCCTGGCATAATCTTTTGCCAGGTTTCATTCCCCGTTAGCGGCTGGGTAGCAATCACGGTAACCACGTCAT
TTGGCGTGGTCTGTGAACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MRKIAFFLAMLLMPCVSFAGLLSSSSPVTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICNYSGGL
GPKRRQGDFKSPEGFYSVQRNQLKPDSRFYKAINIGFPNAYDRAHGYDGKYLMIHGACVSVGCYAMTDSGIDEIFQFVTA
ALVFGQPSVQVSIYPFRMTDANMQRHKYSYYKDFWAQLKPGYDYFEQTHKPPTVSIVDGRYVVSKPLSHEVVQPQLASNY
TLSEAK

Sequences:

>Translated_246_residues
MRKIAFFLAMLLMPCVSFAGLLSSSSPVTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICNYSGGL
GPKRRQGDFKSPEGFYSVQRNQLKPDSRFYKAINIGFPNAYDRAHGYDGKYLMIHGACVSVGCYAMTDSGIDEIFQFVTA
ALVFGQPSVQVSIYPFRMTDANMQRHKYSYYKDFWAQLKPGYDYFEQTHKPPTVSIVDGRYVVSKPLSHEVVQPQLASNY
TLSEAK
>Mature_246_residues
MRKIAFFLAMLLMPCVSFAGLLSSSSPVTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICNYSGGL
GPKRRQGDFKSPEGFYSVQRNQLKPDSRFYKAINIGFPNAYDRAHGYDGKYLMIHGACVSVGCYAMTDSGIDEIFQFVTA
ALVFGQPSVQVSIYPFRMTDANMQRHKYSYYKDFWAQLKPGYDYFEQTHKPPTVSIVDGRYVVSKPLSHEVVQPQLASNY
TLSEAK

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=246, Percent_Identity=90.650406504065, Blast_Score=470, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 28038; Mature: 28038

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIAFFLAMLLMPCVSFAGLLSSSSPVTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCEEEEEEE
MGEQYQLLDSYKICNYSGGLGPKRRQGDFKSPEGFYSVQRNQLKPDSRFYKAINIGFPNA
CCCCEEHHHCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHEEEEEECCCCCC
YDRAHGYDGKYLMIHGACVSVGCYAMTDSGIDEIFQFVTAALVFGQPSVQVSIYPFRMTD
HHHCCCCCCCEEEEECHHHHHCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECC
ANMQRHKYSYYKDFWAQLKPGYDYFEQTHKPPTVSIVDGRYVVSKPLSHEVVQPQLASNY
CCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEECCCEEECCCCCHHHCCCHHHCCC
TLSEAK
CCCCCC
>Mature Secondary Structure
MRKIAFFLAMLLMPCVSFAGLLSSSSPVTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCEEEEEEE
MGEQYQLLDSYKICNYSGGLGPKRRQGDFKSPEGFYSVQRNQLKPDSRFYKAINIGFPNA
CCCCEEHHHCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHEEEEEECCCCCC
YDRAHGYDGKYLMIHGACVSVGCYAMTDSGIDEIFQFVTAALVFGQPSVQVSIYPFRMTD
HHHCCCCCCCEEEEECHHHHHCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECC
ANMQRHKYSYYKDFWAQLKPGYDYFEQTHKPPTVSIVDGRYVVSKPLSHEVVQPQLASNY
CCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEECCCEEECCCCCHHHCCCHHHCCC
TLSEAK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]