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The map label for this gene is sbcD [H]

Identifier: 29142856

GI number: 29142856

Start: 2539026

End: 2540228

Strand: Direct

Name: sbcD [H]

Synonym: t2468

Alternate gene names: 29142856

Gene position: 2539026-2540228 (Clockwise)

Preceding gene: 29142849

Following gene: 29142857

Centisome position: 52.99

GC content: 55.86

Gene sequence:

>1203_bases
ATGCGCATCCTCCACACCTCTGACTGGCATCTGGGACAAAACTTCTACAGTAAAAGCCGCGCCGCGGAGCATCAGGCTTT
TCTGGACTGGCTGCTGGAGACCGCGCAGGCCCATCAGGTGGATGCCATTATTGTCGCTGGCGATATTTTTGATACCGATT
CGCCGCCAAGCTATGCCCGAGAACTTTATAACCGTTTCGTCGTTAATTTACAGCAAACGGGCTGTCATCTGGTGGTGCTG
GCCGGTAATCATGATTCCGTCGCCACGCTAAACGAATCGCGCGACATTCTGGCGTTTCTCAATACAACCGTGATCGCCAG
CGCGGGCTATGCGCCTCGGCTACTTCATCGTCGCGACGGGTCTCCGGGCGCCGTACTGTGCCCCATTCCCTTTTTGCGCC
CGCGCGACATTATTACCAGTCAGGCGGGATTATCCGGCAGCGAGAAACAGCAGCAACTTCTTCATGCAATTGCCGATTAT
TATCAACAGCAGTATCAGGAAGCGTGCCTGCTACGCGGCGAACGAAAGCTGCCGGTTATCGCAACGGGACATTTAACCAC
CGTCGGCGCCAGCAAAAGCGATGCGGTTCGCGACATTTATATCGGTACGCTGGATGCCTTTCCGGCGCAGCATTTCCCCC
CTGCGGATTATATCGCATTGGGACACATTCACCGCGCGCAATGTGTCGGCGGCACAGAGCATATCCGCTATTGCGGCTCG
CCCATCGCCCTCAGCTTTGATGAGTGCGGCAAAAGCAAATGCGTGCATCTGGTGACCTTCGACCAGGGAAAATGGCAAAG
TACCGAAAGTCTGGCTGTCCCCGTGACTCAACTGTTGGCGGTTTTAAAAGGCGACCTGGCGTCAATTACCGAACAGCTTG
AGCAGTGGCGCGGCGTTGAGCAATCGCCCCCCGTCTGGCTGGATATTGAAATCACCACCGATGATTATCTGCATGATATC
CAACGCAGAATACAGGCATTAACGGAGTCACTCCCCGTAGAGGTATTACTGGTGCGCCGTAGCCGCGAACAGCGTGAGCG
CTCGCTGGCGAACGAGCGGCGGGAAACATTAAGCGAGCTTAGCGTGGAAGAGGTTTTTGCGCGGCGTCTGGCGCTGGAAG
CGTTAGATACCCCGCAGCGCGAGCGCCTGAATCAGCTCTTTTCCAGCACGCTCTACGCGTTGAATGAGGAGCATGAGGCA
TGA

Upstream 100 bases:

>100_bases
GTGAAACCGTGCATTACCGTGTACCGGCGGTAAATTGCGCCCAAAAATGGAGGGGATGACGTGTATAATCCCGTTCACGC
TTTTTTTGCATGGAACAATT

Downstream 100 bases:

>100_bases
AAATTCTCAGTTTGCGTCTGAAAAACCTGAACTCGCTGAAAGGAGAATGGAAGGTCGACTTTACCGCCGAACCGTTTGCC
AGTAACGGGTTATTCGCCAT

Product: exonuclease subunit SbcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAIIVAGDIFDTDSPPSYARELYNRFVVNLQQTGCHLVVL
AGNHDSVATLNESRDILAFLNTTVIASAGYAPRLLHRRDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQQQLLHAIADY
YQQQYQEACLLRGERKLPVIATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYIALGHIHRAQCVGGTEHIRYCGS
PIALSFDECGKSKCVHLVTFDQGKWQSTESLAVPVTQLLAVLKGDLASITEQLEQWRGVEQSPPVWLDIEITTDDYLHDI
QRRIQALTESLPVEVLLVRRSREQRERSLANERRETLSELSVEEVFARRLALEALDTPQRERLNQLFSSTLYALNEEHEA

Sequences:

>Translated_400_residues
MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAIIVAGDIFDTDSPPSYARELYNRFVVNLQQTGCHLVVL
AGNHDSVATLNESRDILAFLNTTVIASAGYAPRLLHRRDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQQQLLHAIADY
YQQQYQEACLLRGERKLPVIATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYIALGHIHRAQCVGGTEHIRYCGS
PIALSFDECGKSKCVHLVTFDQGKWQSTESLAVPVTQLLAVLKGDLASITEQLEQWRGVEQSPPVWLDIEITTDDYLHDI
QRRIQALTESLPVEVLLVRRSREQRERSLANERRETLSELSVEEVFARRLALEALDTPQRERLNQLFSSTLYALNEEHEA
>Mature_400_residues
MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAIIVAGDIFDTDSPPSYARELYNRFVVNLQQTGCHLVVL
AGNHDSVATLNESRDILAFLNTTVIASAGYAPRLLHRRDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQQQLLHAIADY
YQQQYQEACLLRGERKLPVIATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYIALGHIHRAQCVGGTEHIRYCGS
PIALSFDECGKSKCVHLVTFDQGKWQSTESLAVPVTQLLAVLKGDLASITEQLEQWRGVEQSPPVWLDIEITTDDYLHDI
QRRIQALTESLPVEVLLVRRSREQRERSLANERRETLSELSVEEVFARRLALEALDTPQRERLNQLFSSTLYALNEEHEA

Specific function: SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sbcD family [H]

Homologues:

Organism=Escherichia coli, GI1786598, Length=400, Percent_Identity=83.75, Blast_Score=696, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004843
- InterPro:   IPR004593 [H]

Pfam domain/function: PF00149 Metallophos [H]

EC number: NA

Molecular weight: Translated: 44851; Mature: 44851

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAIIVAGDIFDTDSPPSYAR
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
ELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFLNTTVIASAGYAPRLLHRRDG
HHHHHHHHEEECCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHCCCC
SPGAVLCPIPFLRPRDIITSQAGLSGSEKQQQLLHAIADYYQQQYQEACLLRGERKLPVI
CCCEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
ATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYIALGHIHRAQCVGGTEHIRYCGS
EECCEEEECCCCCCCHHEEEEECHHCCCCCCCCCCCCEECCCCHHHHHCCCHHHHHHCCC
PIALSFDECGKSKCVHLVTFDQGKWQSTESLAVPVTQLLAVLKGDLASITEQLEQWRGVE
CCEEEHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
QSPPVWLDIEITTDDYLHDIQRRIQALTESLPVEVLLVRRSREQRERSLANERRETLSEL
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
SVEEVFARRLALEALDTPQRERLNQLFSSTLYALNEEHEA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAIIVAGDIFDTDSPPSYAR
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
ELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFLNTTVIASAGYAPRLLHRRDG
HHHHHHHHEEECCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHCCCC
SPGAVLCPIPFLRPRDIITSQAGLSGSEKQQQLLHAIADYYQQQYQEACLLRGERKLPVI
CCCEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
ATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYIALGHIHRAQCVGGTEHIRYCGS
EECCEEEECCCCCCCHHEEEEECHHCCCCCCCCCCCCEECCCCHHHHHCCCHHHHHHCCC
PIALSFDECGKSKCVHLVTFDQGKWQSTESLAVPVTQLLAVLKGDLASITEQLEQWRGVE
CCEEEHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
QSPPVWLDIEITTDDYLHDIQRRIQALTESLPVEVLLVRRSREQRERSLANERRETLSEL
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
SVEEVFARRLALEALDTPQRERLNQLFSSTLYALNEEHEA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]