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The map label for this gene is rssA [H]

Identifier: 29142100

GI number: 29142100

Start: 1725527

End: 1726432

Strand: Reverse

Name: rssA [H]

Synonym: t1665

Alternate gene names: 29142100

Gene position: 1726432-1725527 (Counterclockwise)

Preceding gene: 29142102

Following gene: 29142099

Centisome position: 36.03

GC content: 50.66

Gene sequence:

>906_bases
ATGAGAAAAATGAAAATAGGGCTGGCGCTGGGATCTGGCGCAGCGAGAGGATGGTCTCATATTGGGGTCATCAAAGCCCT
CAAGCAAACAGGCATTGATATTGATATCGTTGCAGGATGCTCAATAGGTTCACTGGTCGGCGCCGCGTATGCCTGTAATA
AATTATCGGCGCTTGAACAGTGGGTATGTTCATTCCGCTACTGGGATGTTTTACGCCTGATGGATGTATCCTGGGGCAGA
GGAGGGTTGCTTCGCGGCAAACGCGTATTTAATCACTATCGGGATATTATGCCCGTCACGGATTTTGACCACTGTTCAAG
ACGTTTTGGCGCGGTCGCGACGAATCTTAGCACGGGACGAGAGCTATGGTTTACTGAAGGCGATCTACACCTTGCCGTAC
GCGCGTCGTGCAGTATGCCAGGGCTGATGTCTCCGGTTGAACATAACGGTTACTGGCTGGTAGATGGCGCAGTCGTTAAT
CCGGTACCTGTTTCGTTAACCAGGGCGCTGGGGGCTGATATCGTTATTGCGGTAGACCTGCAACATGATGCCCACCTCAT
GCAGCAAGATTTGCTCTCTGTAAATGTCGGGAATATCAATGAAGAGAGCGATGATGCGCTGCCCTGGCATAAGCGTTTAA
AAGAACGTTTCAGTAGCCTGACTTCACGCCGTGGCGTGAGTTCGTCTGGGGCAATGGAAATCATGACAACCTCCATCCAG
GTGTTGGAAAATCGTCTTAAACGTAACCGTATGGCTGGCGATCCGCCTGATATTCTCATTCAACCATTCTGTCCGCAAAT
CTCTACGCTGGATTTTCATCGCGCCCATGCCGCTATTGCGGCGGGTCAGTTAGCCGTAGAGAAAAAGATGGACGAACTTA
TACCCTTGGTGCGTACCGACGTTTAA

Upstream 100 bases:

>100_bases
CCCTGAATATAAAACGGCGTTGAACGCCAGGGTGGCATTATGTTAACTGAGCAGTGGCGATGTTGCTACGTCTTGAAGCC
AGGGGAAGTCGTTAAGTACG

Downstream 100 bases:

>100_bases
TGTACCTTTTACGATCACTTAAGCAAATTCTGACAGGCGCAAGCGGCAATACCATGCCACTATTGATTAAAGCCAGTCAG
GGGAGAGAACATGACGCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MRKMKIGLALGSGAARGWSHIGVIKALKQTGIDIDIVAGCSIGSLVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGR
GGLLRGKRVFNHYRDIMPVTDFDHCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVN
PVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSVNVGNINEESDDALPWHKRLKERFSSLTSRRGVSSSGAMEIMTTSIQ
VLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAHAAIAAGQLAVEKKMDELIPLVRTDV

Sequences:

>Translated_301_residues
MRKMKIGLALGSGAARGWSHIGVIKALKQTGIDIDIVAGCSIGSLVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGR
GGLLRGKRVFNHYRDIMPVTDFDHCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVN
PVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSVNVGNINEESDDALPWHKRLKERFSSLTSRRGVSSSGAMEIMTTSIQ
VLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAHAAIAAGQLAVEKKMDELIPLVRTDV
>Mature_301_residues
MRKMKIGLALGSGAARGWSHIGVIKALKQTGIDIDIVAGCSIGSLVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGR
GGLLRGKRVFNHYRDIMPVTDFDHCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVN
PVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSVNVGNINEESDDALPWHKRLKERFSSLTSRRGVSSSGAMEIMTTSIQ
VLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAHAAIAAGQLAVEKKMDELIPLVRTDV

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=183, Percent_Identity=31.1475409836066, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI116256487, Length=183, Percent_Identity=31.1475409836066, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI260656037, Length=183, Percent_Identity=31.1475409836066, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI260656043, Length=183, Percent_Identity=31.1475409836066, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI260656039, Length=183, Percent_Identity=31.1475409836066, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI148727290, Length=186, Percent_Identity=30.6451612903226, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI148727335, Length=186, Percent_Identity=30.6451612903226, Blast_Score=87, Evalue=1e-17,
Organism=Escherichia coli, GI226510936, Length=301, Percent_Identity=83.0564784053156, Blast_Score=530, Evalue=1e-152,
Organism=Caenorhabditis elegans, GI193204778, Length=184, Percent_Identity=32.6086956521739, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71997289, Length=164, Percent_Identity=30.4878048780488, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71997299, Length=164, Percent_Identity=30.4878048780488, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323581, Length=302, Percent_Identity=26.4900662251656, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571388, Length=190, Percent_Identity=31.0526315789474, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281376913, Length=190, Percent_Identity=30.5263157894737, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 33113; Mature: 33113

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS01237 UPF0028

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKMKIGLALGSGAARGWSHIGVIKALKQTGIDIDIVAGCSIGSLVGAAYACNKLSALEQ
CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
WVCSFRYWDVLRLMDVSWGRGGLLRGKRVFNHYRDIMPVTDFDHCSRRFGAVATNLSTGR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
ELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVNPVPVSLTRALGADIVIAVDL
EEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEECCCCHHHHHHCCCCEEEEEEC
QHDAHLMQQDLLSVNVGNINEESDDALPWHKRLKERFSSLTSRRGVSSSGAMEIMTTSIQ
CHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
VLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAHAAIAAGQLAVEKKMDELIPLVRTD
HHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
V
C
>Mature Secondary Structure
MRKMKIGLALGSGAARGWSHIGVIKALKQTGIDIDIVAGCSIGSLVGAAYACNKLSALEQ
CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
WVCSFRYWDVLRLMDVSWGRGGLLRGKRVFNHYRDIMPVTDFDHCSRRFGAVATNLSTGR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
ELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVNPVPVSLTRALGADIVIAVDL
EEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEECCCCHHHHHHCCCCEEEEEEC
QHDAHLMQQDLLSVNVGNINEESDDALPWHKRLKERFSSLTSRRGVSSSGAMEIMTTSIQ
CHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
VLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAHAAIAAGQLAVEKKMDELIPLVRTD
HHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]