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The map label for this gene is ychE [H]

Identifier: 29142094

GI number: 29142094

Start: 1717488

End: 1718135

Strand: Reverse

Name: ychE [H]

Synonym: t1659

Alternate gene names: 29142094

Gene position: 1718135-1717488 (Counterclockwise)

Preceding gene: 29142096

Following gene: 29142093

Centisome position: 35.85

GC content: 50.46

Gene sequence:

>648_bases
GTGATTCAACCGCTTTTTGATTTTCCTGTTTACTTTAAGTTCTTTATCGGGCTCTTTGCGCTGGTTAACCCGGTGGGGAT
TATTCCCGTTTTCATCAGCATGACCAGCTACCAGACGGCCACGGCGCGTAATAAAACTAACCTCACCGCGAATCTGTCGG
TCGCGATTATCTTGTGGAGTTCCTTATTCCTCGGCGATGGCATCCTGCAGCTGTTTGGTATTTCTATTGATTCGTTCAGA
ATTGCGGGCGGTATCCTGGTTGTCACCATTGCAATGTCGATGATCAGCGGGAAGCTGGGGGAAGATAAACAAAACAAGCA
AGAAAAGTCAGAGACGGCCATACGCGAGAGCATTGGCGTTGTGCCGTTAGCGCTACCGTTAATGGCGGGGCCAGGGGCGA
TTAGCTCCACTATCGTCTGGGGGACGCGTTATCACAGCATCGCGCATTTGCTTGGTTTTTCAGTTGCCATTGCGCTTTTT
GCGCTTTGCTGCTGGGGCGTGTTCCGTATGGCGCCGTGGCTGGTTCGTTTGCTGGGGCAAACCGGTATCAACGTTATTAC
CCGAATCATGGGGTTGTTGTTAATGGCGCTCGGCATCGAATTTATTGTCACAGGAATAAAAGGCATTTTCCCCGGCTTGC
TCAACTAA

Upstream 100 bases:

>100_bases
GTAGATAAGAGGTGAACTATGCGAATAAAAGGCGTATCTTCTGCGCGTTTTGATCATTAACGAACATTGACTTCATCCGG
CTAACGCTTCGGAGCTAACC

Downstream 100 bases:

>100_bases
ACTCCCACCTGTTGATTTACAGGCGGCGCCCTAAGGGGGCCGCCTTGTGACATTCCCAGTGACATTCCCACGTAACACTT
CTTACTTTGATAAGCATTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MIQPLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARNKTNLTANLSVAIILWSSLFLGDGILQLFGISIDSFR
IAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALF
ALCCWGVFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN

Sequences:

>Translated_215_residues
MIQPLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARNKTNLTANLSVAIILWSSLFLGDGILQLFGISIDSFR
IAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALF
ALCCWGVFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN
>Mature_215_residues
MIQPLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARNKTNLTANLSVAIILWSSLFLGDGILQLFGISIDSFR
IAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALF
ALCCWGVFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=215, Percent_Identity=93.953488372093, Blast_Score=401, Evalue=1e-113,
Organism=Escherichia coli, GI1787809, Length=194, Percent_Identity=30.9278350515464, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1789842, Length=195, Percent_Identity=27.6923076923077, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 23222; Mature: 23222

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQPLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARNKTNLTANLSVAIILWS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHH
SLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCH
VPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALFALCCWGVFRMAPWLVRLLGQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIQPLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARNKTNLTANLSVAIILWS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHH
SLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCH
VPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALFALCCWGVFRMAPWLVRLLGQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2015910; 9097039; 9278503 [H]