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The map label for this gene is ydcO [H]

Identifier: 29141959

GI number: 29141959

Start: 1571734

End: 1572972

Strand: Direct

Name: ydcO [H]

Synonym: t1515

Alternate gene names: 29141959

Gene position: 1571734-1572972 (Clockwise)

Preceding gene: 29141956

Following gene: 29141963

Centisome position: 32.8

GC content: 56.98

Gene sequence:

>1239_bases
TTGTACGCTATAACGCACAATGCTACATTGACTGACCGTTATAACGCACAAGAGGCGATCATGCGTCTGTTATCACTGCC
GTTACCTACTGTATTATCTGGTCTGGTCGCCGTTCTGGTCGGCTATGCAAGTTCCGCCGCCATTATCTGGCAGGCGGCGC
TTGCCGCTGGCGCAACACCCGCAGAGATCGCCGGCTGGATGACCGCCCTCGGTATAGCCATGGGCATAAGCACACTAACG
TTAACCTTGTGGTATCGTGCGCCGGTTTTAACCGCCTGGTCAACGCCTGGCGCCGCTCTGTTGGTGACAGGGCTTCAGGG
ATTATCGTTGCCAGACGCCGTGGGCATATTCATTGTCGCCAATGCCCTGATTGTGCTGTGCGGCGTCACGGGATTGTTTG
CGCGTTTGATGCGGATAATCCCCCATTCTCTTGCCGCCGCAATGCTGGCGGGAATACTGCTACGCTTCGGCCTGCAGGCG
TTCGGGACGCTCAACGGAGAGTTTGTCATGTGCGGCGGTATGCTATTGGCGTGGCTACTCTTTAAAGTATTCGCGCCCCG
CTATGCCGTTATTGCTGCCATGGTGATGGGAATAACGGTGGCGCTCATCCAGGGTAAGATGGCGATGAGCGGTATTCATT
TCGCGCCGGTGTGGCCCACCTTCGTTCCCCCCCACTTTTCATTCGCTCAAAGCCTGAGCGTCGCGGTACCGCTCTTCCTG
GTGACGATGGCATCGCAAAACGCCCCCGGCGTCGCCACAATGAAGGCGTCTGGCTATCAGCTTCCTGTCTCTCCGTTAAT
GATTTTTACCGGATTACTGGCGCTGCTGCTTTCGCCGTTTGGCGTTTATTCTATCTGCATTGCCGCCATTACAGCCGCCA
TTTGTCAAAGCCCGGACGCGCACCCCGATCCAACGCGTCGCTGGTTAGCGGCCGCCGCCGCAGGCGTTTTTTATTTACTT
GCCGGGTGGTTTGGCGGTTCGATAACCGAGCTGATGGTCGCCCTACCGGTTAGCTGGGTGCAAATGCTGGCTGGTCTGGC
ACTGTTAAGTACGATTAGCGGTAGTCTGTATCAGGCGCTTACTCACGAAAGTGAGCGTGACGCGGCAGTTATCGCATTTC
TCGTCACCGCCAGCGGGCTAACGCTGATGGGCATCGGATCGGCATTCTGGGGGTTGATCGCTGGCGGGATAGGCTACGCA
ATATTAACGAGAACGCGCCGCCCGTCGTTGTCTGGCTGA

Upstream 100 bases:

>100_bases
TAAACTCCAGCCTCGCTGATGGCGTAACGTTCTTAACGTGGTCGCCAGATAGTGTGTCAGGTTATCCATTTTTCCCCCCT
GTAAGGCCATAGCGTATCAC

Downstream 100 bases:

>100_bases
TGGCGGCCGCTAATCTGCCGGGGTTTGCGCCATCTTGCGATGGCGCCGCAGAATTATTTTTTGTTAGTGTCAAACATAGA
GGTATCCGTCGCCATATCAT

Product: benzoate membrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MYAITHNATLTDRYNAQEAIMRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIAGWMTALGIAMGISTLT
LTLWYRAPVLTAWSTPGAALLVTGLQGLSLPDAVGIFIVANALIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQA
FGTLNGEFVMCGGMLLAWLLFKVFAPRYAVIAAMVMGITVALIQGKMAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFL
VTMASQNAPGVATMKASGYQLPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDAHPDPTRRWLAAAAAGVFYLL
AGWFGGSITELMVALPVSWVQMLAGLALLSTISGSLYQALTHESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYA
ILTRTRRPSLSG

Sequences:

>Translated_412_residues
MYAITHNATLTDRYNAQEAIMRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIAGWMTALGIAMGISTLT
LTLWYRAPVLTAWSTPGAALLVTGLQGLSLPDAVGIFIVANALIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQA
FGTLNGEFVMCGGMLLAWLLFKVFAPRYAVIAAMVMGITVALIQGKMAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFL
VTMASQNAPGVATMKASGYQLPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDAHPDPTRRWLAAAAAGVFYLL
AGWFGGSITELMVALPVSWVQMLAGLALLSTISGSLYQALTHESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYA
ILTRTRRPSLSG
>Mature_412_residues
MYAITHNATLTDRYNAQEAIMRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIAGWMTALGIAMGISTLT
LTLWYRAPVLTAWSTPGAALLVTGLQGLSLPDAVGIFIVANALIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQA
FGTLNGEFVMCGGMLLAWLLFKVFAPRYAVIAAMVMGITVALIQGKMAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFL
VTMASQNAPGVATMKASGYQLPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDAHPDPTRRWLAAAAAGVFYLL
AGWFGGSITELMVALPVSWVQMLAGLALLSTISGSLYQALTHESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYA
ILTRTRRPSLSG

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=390, Percent_Identity=74.8717948717949, Blast_Score=579, Evalue=1e-166,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 42956; Mature: 42956

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAITHNATLTDRYNAQEAIMRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATP
CEEEECCCEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCH
AEIAGWMTALGIAMGISTLTLTLWYRAPVLTAWSTPGAALLVTGLQGLSLPDAVGIFIVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHEECCCCCCCCHHHHHHHHH
NALIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQAFGTLNGEFVMCGGMLLAWLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH
FKVFAPRYAVIAAMVMGITVALIQGKMAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHH
VTMASQNAPGVATMKASGYQLPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDA
HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
HPDPTRRWLAAAAAGVFYLLAGWFGGSITELMVALPVSWVQMLAGLALLSTISGSLYQAL
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYAILTRTRRPSLSG
HCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MYAITHNATLTDRYNAQEAIMRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATP
CEEEECCCEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCH
AEIAGWMTALGIAMGISTLTLTLWYRAPVLTAWSTPGAALLVTGLQGLSLPDAVGIFIVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHEECCCCCCCCHHHHHHHHH
NALIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQAFGTLNGEFVMCGGMLLAWLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH
FKVFAPRYAVIAAMVMGITVALIQGKMAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHH
VTMASQNAPGVATMKASGYQLPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDA
HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
HPDPTRRWLAAAAAGVFYLLAGWFGGSITELMVALPVSWVQMLAGLALLSTISGSLYQAL
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYAILTRTRRPSLSG
HCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]