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The map label for this gene is srfC

Identifier: 29141949

GI number: 29141949

Start: 1559697

End: 1561844

Strand: Direct

Name: srfC

Synonym: t1505

Alternate gene names: NA

Gene position: 1559697-1561844 (Clockwise)

Preceding gene: 29141948

Following gene: 29141955

Centisome position: 32.55

GC content: 57.17

Gene sequence:

>2148_bases
ATGACAAAACCGTTAAACGCCACTCAGGCTGTTATCGAGTGGGTTAACAACACGCGCCGTTACGCAACGCGACTGGATGA
CGAAGCCGACGCTCTGCTGGCGCAACTTACGCTTGCCGCGGCGGATGAGTCAGCGCTCAACGCCGCCTGCGCATCATCAC
ATGGCTGCGTTGGTCTGTACGGGTATGCGCAATCCGCAAAAGCGCATCTGTTAACGACGCTATGCGGTAACGAGAATGGC
AAGCTGGAAATTATCACGCCGGACCGTGACTATGATTATTTCAGCCACATCAATCCGGGTCATGCGCCAGCGAATATGGC
TATTCGCTTTACGCGCGACATTTTTTCAAACGAGAGCGGCTGGCCGTTGCGCCTGCGCTTGATCAGTGAAGCCGAACTGG
TGCAGATCTTTATTGCCTGGACCAGCTCGTCCCCCGTTTGTCGCCAGGTCGAAAAATCCATTATCACATCACGCCTGGAG
AAATGGCAATCGCTTCGCCAACCGCAGCCCGTCCCCGGCGTTACCGCTGAAGAGGTAGCGACCATCGCGAGTTTCTGGCG
CTCTTGCCTCCCGTCCGCCAGACAACATATTGATGATGCGACATGGCAACACTTTGCCTCGCTCTTGCCTGCGCTGGATC
TCACGACACGGGCGCACGCCTGGGCATTACTGTGGGGAGAGCAACCAGAGATCACCCAGCAATGGCTGGCGCTGGCGCAT
ATGTTGCAACAAACCGGCCATGCCGGGGAACTGGCGGCGCCGCTCAGCCTGCTGGTCGATCATTTTGGCTTACCGGCGGA
AAACTTCCTGACGCAAATGGCGCTAACCGCCAGCGATACGCAAAGCGATGTGGTGGTGCATCCGGTTAAGGAAGGCCGAC
TGCTCAATGCGGTCAGCCTTTCGCTTGATTCTCTGGCGCTGCTTACCCGCGAACTGGTGCTAACCGTTGAAAATAGCGTA
CTGGATAACGTTGATTTACTGGATATTCCGGTCGCGCCAGACAGTCATCCTCATCCGTTATGGCGGGCGAAATTAGGCTG
GATGCTGGCCCATTACCGTCAGCAGATACAGCCCGATGTTCTGGTGATTTGCAATGCTCTGGCATCTCGCTCGCAAACGT
CCACTGCCGCCCGTCACTTACTGGAGTGGGTTAACGCCACGCAGCCGCAGCATGAATCAGCGTTACCCGGCGTCGTCTGG
GCTATTACTCCACAGGATGCCCGTTTTGCCACCCAGCAAAATCTGGATGAAGCCGTCCAGCAGTTGATGGGTAAACCTGG
CGTGCATTGGGGAACGTTGCAGGCGCTGGATAAACACAGTATGCAGCGTTTGGTGGAGTGGTTATCGCAGGCGACATCGG
CACCACAGCGACAGGCGCGCTTACAGGCGTTACGCGAACAACTGCGAGGCCGCGTGCGCGATCTGTTACCGATGTGTGAT
GACGCGCGGCTACCGGTTGAAACCGTGATCCGGCGTCTTCAGGCCCAGGCCGCCAGACATGGCGACCTGCTGGCCGGGCT
GTTACCGCCGGTACAGAATTTCGAAGCGTTGCTGCGCACCCGACAGTCGCGAGAAGAACAGGTCAGCGGTTTATTTAATG
ACGCGATCGATCTCTTTGCCGACGAACCAACGCACGCTTCAGCGTCAGAAGGTCATGAAACAGGCTACCAGGCGCACAAA
ATGTGGATCAATCATCTGCGCCAGTGGGCCCACTGCCGGGATAATGCGCAGCGTCTGGGACTGGAACCGCAGATGCTCAA
CGCCGTGGCGGAGATTTTAATTACCGCCAGCTATCGCCTCGGTTTACCTCAGCAGTTACAGAAAACCATGCAGCGCGAGG
AGGTGAGCGGCGCGCAGCTTCATGCCATCATTGGTAACTTCATCGCCTGGCTCGGCTACGCCAATATCGAGGAGGCCCAA
CGCCCGGCCAGCCGCGTTCAGAAAGGCGCAGCCATTTTCGCCGCAACGCCGCGTTCGACAATGTTGCGTCTAACAAAGCT
TGACGAACAGCCCGTTCACGCCGCCAGCCGCTATGTCTATGACTGGCTTGTTGCGCTGTATACCCTGGCCAATGAGAACG
CAGGATATCGGCATCCGCAGGACGTTACCGACGTAGACAGAGCGCAATTAATTGCCCTGATAGCCTGA

Upstream 100 bases:

>100_bases
CGGTCGCCGCCGATGCGCTGACATTAAAATTGAATACGCTGGCTGACCGCCGCCACAGCGGCAGCCACTACTGGATAGAT
AGCGGGAGTGTATACCTGAA

Downstream 100 bases:

>100_bases
CCTGGCGGAAAAACCATGCCCGGTAACCTGTATCGGGCTTGAGGTCAGAAAAGCGAAAACAGCAATGCGACGGGGAAACT
TATCGGCCATGTCGCGCCAA

Product: virulence effector protein

Products: NA

Alternate protein names: Virulence Effector SrfC; Virulence Protein; Virulence Effector Protein; Virulence Factor SrfC-Like Protein; Virulence Factor Protein; Type III Secretion System Effector; HopL1 Protein; Protein Conserved In Bacteria Virulence Factor; Type III Effector Protein; Coiled-Coil Structure; Virulence Factor SrfC

Number of amino acids: Translated: 715; Mature: 714

Protein sequence:

>715_residues
MTKPLNATQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADESALNAACASSHGCVGLYGYAQSAKAHLLTTLCGNENG
KLEIITPDRDYDYFSHINPGHAPANMAIRFTRDIFSNESGWPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLE
KWQSLRQPQPVPGVTAEEVATIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAHAWALLWGEQPEITQQWLALAH
MLQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTASDTQSDVVVHPVKEGRLLNAVSLSLDSLALLTRELVLTVENSV
LDNVDLLDIPVAPDSHPHPLWRAKLGWMLAHYRQQIQPDVLVICNALASRSQTSTAARHLLEWVNATQPQHESALPGVVW
AITPQDARFATQQNLDEAVQQLMGKPGVHWGTLQALDKHSMQRLVEWLSQATSAPQRQARLQALREQLRGRVRDLLPMCD
DARLPVETVIRRLQAQAARHGDLLAGLLPPVQNFEALLRTRQSREEQVSGLFNDAIDLFADEPTHASASEGHETGYQAHK
MWINHLRQWAHCRDNAQRLGLEPQMLNAVAEILITASYRLGLPQQLQKTMQREEVSGAQLHAIIGNFIAWLGYANIEEAQ
RPASRVQKGAAIFAATPRSTMLRLTKLDEQPVHAASRYVYDWLVALYTLANENAGYRHPQDVTDVDRAQLIALIA

Sequences:

>Translated_715_residues
MTKPLNATQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADESALNAACASSHGCVGLYGYAQSAKAHLLTTLCGNENG
KLEIITPDRDYDYFSHINPGHAPANMAIRFTRDIFSNESGWPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLE
KWQSLRQPQPVPGVTAEEVATIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAHAWALLWGEQPEITQQWLALAH
MLQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTASDTQSDVVVHPVKEGRLLNAVSLSLDSLALLTRELVLTVENSV
LDNVDLLDIPVAPDSHPHPLWRAKLGWMLAHYRQQIQPDVLVICNALASRSQTSTAARHLLEWVNATQPQHESALPGVVW
AITPQDARFATQQNLDEAVQQLMGKPGVHWGTLQALDKHSMQRLVEWLSQATSAPQRQARLQALREQLRGRVRDLLPMCD
DARLPVETVIRRLQAQAARHGDLLAGLLPPVQNFEALLRTRQSREEQVSGLFNDAIDLFADEPTHASASEGHETGYQAHK
MWINHLRQWAHCRDNAQRLGLEPQMLNAVAEILITASYRLGLPQQLQKTMQREEVSGAQLHAIIGNFIAWLGYANIEEAQ
RPASRVQKGAAIFAATPRSTMLRLTKLDEQPVHAASRYVYDWLVALYTLANENAGYRHPQDVTDVDRAQLIALIA
>Mature_714_residues
TKPLNATQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADESALNAACASSHGCVGLYGYAQSAKAHLLTTLCGNENGK
LEIITPDRDYDYFSHINPGHAPANMAIRFTRDIFSNESGWPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLEK
WQSLRQPQPVPGVTAEEVATIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAHAWALLWGEQPEITQQWLALAHM
LQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTASDTQSDVVVHPVKEGRLLNAVSLSLDSLALLTRELVLTVENSVL
DNVDLLDIPVAPDSHPHPLWRAKLGWMLAHYRQQIQPDVLVICNALASRSQTSTAARHLLEWVNATQPQHESALPGVVWA
ITPQDARFATQQNLDEAVQQLMGKPGVHWGTLQALDKHSMQRLVEWLSQATSAPQRQARLQALREQLRGRVRDLLPMCDD
ARLPVETVIRRLQAQAARHGDLLAGLLPPVQNFEALLRTRQSREEQVSGLFNDAIDLFADEPTHASASEGHETGYQAHKM
WINHLRQWAHCRDNAQRLGLEPQMLNAVAEILITASYRLGLPQQLQKTMQREEVSGAQLHAIIGNFIAWLGYANIEEAQR
PASRVQKGAAIFAATPRSTMLRLTKLDEQPVHAASRYVYDWLVALYTLANENAGYRHPQDVTDVDRAQLIALIA

Specific function: Unknown

COG id: COG4458

COG function: function code S; Uncharacterized protein conserved in bacteria, putative virulence factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79572; Mature: 79441

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPLNATQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADESALNAACASSHGCVGLY
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEE
GYAQSAKAHLLTTLCGNENGKLEIITPDRDYDYFSHINPGHAPANMAIRFTRDIFSNESG
CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCCCHHHHEEHHHHHCCCCC
WPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLEKWQSLRQPQPVPGVTAEEVA
CEEEEEEECHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
TIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAHAWALLWGEQPEITQQWLALAH
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHH
MLQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTASDTQSDVVVHPVKEGRLLNAVSL
HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
SLDSLALLTRELVLTVENSVLDNVDLLDIPVAPDSHPHPLWRAKLGWMLAHYRQQIQPDV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
LVICNALASRSQTSTAARHLLEWVNATQPQHESALPGVVWAITPQDARFATQQNLDEAVQ
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHH
QLMGKPGVHWGTLQALDKHSMQRLVEWLSQATSAPQRQARLQALREQLRGRVRDLLPMCD
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DARLPVETVIRRLQAQAARHGDLLAGLLPPVQNFEALLRTRQSREEQVSGLFNDAIDLFA
CCCCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DEPTHASASEGHETGYQAHKMWINHLRQWAHCRDNAQRLGLEPQMLNAVAEILITASYRL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
GLPQQLQKTMQREEVSGAQLHAIIGNFIAWLGYANIEEAQRPASRVQKGAAIFAATPRST
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHH
MLRLTKLDEQPVHAASRYVYDWLVALYTLANENAGYRHPQDVTDVDRAQLIALIA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TKPLNATQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADESALNAACASSHGCVGLY
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEE
GYAQSAKAHLLTTLCGNENGKLEIITPDRDYDYFSHINPGHAPANMAIRFTRDIFSNESG
CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCCCHHHHEEHHHHHCCCCC
WPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLEKWQSLRQPQPVPGVTAEEVA
CEEEEEEECHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
TIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAHAWALLWGEQPEITQQWLALAH
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHH
MLQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTASDTQSDVVVHPVKEGRLLNAVSL
HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
SLDSLALLTRELVLTVENSVLDNVDLLDIPVAPDSHPHPLWRAKLGWMLAHYRQQIQPDV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
LVICNALASRSQTSTAARHLLEWVNATQPQHESALPGVVWAITPQDARFATQQNLDEAVQ
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHH
QLMGKPGVHWGTLQALDKHSMQRLVEWLSQATSAPQRQARLQALREQLRGRVRDLLPMCD
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DARLPVETVIRRLQAQAARHGDLLAGLLPPVQNFEALLRTRQSREEQVSGLFNDAIDLFA
CCCCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DEPTHASASEGHETGYQAHKMWINHLRQWAHCRDNAQRLGLEPQMLNAVAEILITASYRL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
GLPQQLQKTMQREEVSGAQLHAIIGNFIAWLGYANIEEAQRPASRVQKGAAIFAATPRST
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHH
MLRLTKLDEQPVHAASRYVYDWLVALYTLANENAGYRHPQDVTDVDRAQLIALIA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA