Click here to switch to the map view.

The map label for this gene is yncB [H]

Identifier: 29141943

GI number: 29141943

Start: 1552714

End: 1553751

Strand: Reverse

Name: yncB [H]

Synonym: t1499

Alternate gene names: 29141943

Gene position: 1553751-1552714 (Counterclockwise)

Preceding gene: 29141946

Following gene: 29141942

Centisome position: 32.42

GC content: 54.14

Gene sequence:

>1038_bases
ATGAAGCAACAGACCAACCGAAATCGTCGTTGGGTTTTGGCCTCGCGTCCCCACGGCGCGCCGCAGATGGATAACTTCCG
CCTCGAAGAAGATGACGTCGCGACGCCCGGTGAAGGGCAGGTGCTATTGCGTACCGTTTTTTTATCACTCGACCCTTATA
TGCGTGGCCGCATGAGCGATGAACCCTCTTATGCGCCGCCAGTTGAACCTGGCTGCGTTATGGTTGGCGGTACGGTCAGT
CGCGTTGTCGCGTCGAATCATCCTGATTACCGACCAGACGAATGGGTGTTGAGTTACAATGGTTGGCAGGATTATGACAT
TTCAGATGGCGAAGGGTTGGTAAAGCTGGGTGATAATCCGCAACATCCTTCCTGGTCGTTGGGAGTTTTAGGGATGCCGG
GGTTTACCGCCTATATGGGGTTACTGGATATCGGCCAGCCGAAAGAGGGCGAAACGCTGGTTGTCGCCGCCGCCACCGGC
CCCGTAGGCGCAACGGTTGGGCAAATTGGCAAGCTGAAGGGCTGCCGGGTCGTGGGTATTGCCGGCGGCGCGGAAAAATG
CCGTCATGCGACAGACGTTTTGGGATTTGATCTGTGCCTTGATCATCACGCTGATAATTTCCCACAACAGCTTGCGCAGG
CCTGCCCGCAGGGTATCGATATCTATTATGAGAATGTCGGTGGTAAAGTCTTTGACGCCGTCTTACCGCTACTGAATACG
TCGGCGCGGATTCCGCTCTGCGGTCTGGTCAGCGGCTACAATGCGACAACGTTGCCGGACGGTCCAGACAGACTGCCACT
GCTGATGGCGACATTACTTAAAAAGCGTATTCGCCTGCAAGGTTTTATCATCAACCAGGACTATGGTCACCGGATACATG
AGTTTCAGCAAGAAATGGGGCGTTGGATCAAAGAAGGGAAAATACATTACCGGGAGCAGATTACTGATGGGCTGGAAAAT
GCGCCAGAAGCGTTTATAGGGCTGCTGGCGGGGAAGAACTTTGGCAAAGTCGTGATACGTTTAGCGGACGATGCGTAA

Upstream 100 bases:

>100_bases
CATAAAAGCGCACAGCCTGATATCTGAGAGTGTTTAACTCCCTCAGAAAGCTAATGTTCGACTATTATTGATGGATTATG
CCAGGCATGAGGAGAATAGA

Downstream 100 bases:

>100_bases
AGAAAAAATGGCGGCATTATGTCGCCATAAAAATGTGCAAATTTTAAAATTGCGGCTTTACTTATATTCATCATTCAGAT
CGCGGTGGGGCAGCTTATCT

Product: NADP-dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MKQQTNRNRRWVLASRPHGAPQMDNFRLEEDDVATPGEGQVLLRTVFLSLDPYMRGRMSDEPSYAPPVEPGCVMVGGTVS
RVVASNHPDYRPDEWVLSYNGWQDYDISDGEGLVKLGDNPQHPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
PVGATVGQIGKLKGCRVVGIAGGAEKCRHATDVLGFDLCLDHHADNFPQQLAQACPQGIDIYYENVGGKVFDAVLPLLNT
SARIPLCGLVSGYNATTLPDGPDRLPLLMATLLKKRIRLQGFIINQDYGHRIHEFQQEMGRWIKEGKIHYREQITDGLEN
APEAFIGLLAGKNFGKVVIRLADDA

Sequences:

>Translated_345_residues
MKQQTNRNRRWVLASRPHGAPQMDNFRLEEDDVATPGEGQVLLRTVFLSLDPYMRGRMSDEPSYAPPVEPGCVMVGGTVS
RVVASNHPDYRPDEWVLSYNGWQDYDISDGEGLVKLGDNPQHPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
PVGATVGQIGKLKGCRVVGIAGGAEKCRHATDVLGFDLCLDHHADNFPQQLAQACPQGIDIYYENVGGKVFDAVLPLLNT
SARIPLCGLVSGYNATTLPDGPDRLPLLMATLLKKRIRLQGFIINQDYGHRIHEFQQEMGRWIKEGKIHYREQITDGLEN
APEAFIGLLAGKNFGKVVIRLADDA
>Mature_345_residues
MKQQTNRNRRWVLASRPHGAPQMDNFRLEEDDVATPGEGQVLLRTVFLSLDPYMRGRMSDEPSYAPPVEPGCVMVGGTVS
RVVASNHPDYRPDEWVLSYNGWQDYDISDGEGLVKLGDNPQHPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
PVGATVGQIGKLKGCRVVGIAGGAEKCRHATDVLGFDLCLDHHADNFPQQLAQACPQGIDIYYENVGGKVFDAVLPLLNT
SARIPLCGLVSGYNATTLPDGPDRLPLLMATLLKKRIRLQGFIINQDYGHRIHEFQQEMGRWIKEGKIHYREQITDGLEN
APEAFIGLLAGKNFGKVVIRLADDA

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226246682, Length=351, Percent_Identity=37.8917378917379, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI226246680, Length=351, Percent_Identity=37.8917378917379, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI22748929, Length=351, Percent_Identity=37.8917378917379, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI226059159, Length=338, Percent_Identity=36.3905325443787, Blast_Score=216, Evalue=3e-56,
Organism=Homo sapiens, GI226059133, Length=338, Percent_Identity=36.3905325443787, Blast_Score=216, Evalue=3e-56,
Organism=Homo sapiens, GI226056130, Length=310, Percent_Identity=34.5161290322581, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI28557745, Length=342, Percent_Identity=28.6549707602339, Blast_Score=104, Evalue=1e-22,
Organism=Escherichia coli, GI226510941, Length=344, Percent_Identity=86.3372093023256, Blast_Score=619, Evalue=1e-179,
Organism=Caenorhabditis elegans, GI133901710, Length=358, Percent_Identity=32.9608938547486, Blast_Score=166, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI133901712, Length=358, Percent_Identity=32.9608938547486, Blast_Score=166, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6323504, Length=370, Percent_Identity=27.2972972972973, Blast_Score=122, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37761; Mature: 37761

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQQTNRNRRWVLASRPHGAPQMDNFRLEEDDVATPGEGQVLLRTVFLSLDPYMRGRMSD
CCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCEEEHHHHHHCCHHHHCCCCC
EPSYAPPVEPGCVMVGGTVSRVVASNHPDYRPDEWVLSYNGWQDYDISDGEGLVKLGDNP
CCCCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCC
QHPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGI
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEE
AGGAEKCRHATDVLGFDLCLDHHADNFPQQLAQACPQGIDIYYENVGGKVFDAVLPLLNT
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCC
SARIPLCGLVSGYNATTLPDGPDRLPLLMATLLKKRIRLQGFIINQDYGHRIHEFQQEMG
CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHH
RWIKEGKIHYREQITDGLENAPEAFIGLLAGKNFGKVVIRLADDA
HHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEECCC
>Mature Secondary Structure
MKQQTNRNRRWVLASRPHGAPQMDNFRLEEDDVATPGEGQVLLRTVFLSLDPYMRGRMSD
CCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCEEEHHHHHHCCHHHHCCCCC
EPSYAPPVEPGCVMVGGTVSRVVASNHPDYRPDEWVLSYNGWQDYDISDGEGLVKLGDNP
CCCCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCC
QHPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGI
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEE
AGGAEKCRHATDVLGFDLCLDHHADNFPQQLAQACPQGIDIYYENVGGKVFDAVLPLLNT
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCC
SARIPLCGLVSGYNATTLPDGPDRLPLLMATLLKKRIRLQGFIINQDYGHRIHEFQQEMG
CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHH
RWIKEGKIHYREQITDGLENAPEAFIGLLAGKNFGKVVIRLADDA
HHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]