Click here to switch to the map view.

The map label for this gene is sdaC [H]

Identifier: 29141168

GI number: 29141168

Start: 744308

End: 745675

Strand: Direct

Name: sdaC [H]

Synonym: t0659

Alternate gene names: 29141168

Gene position: 744308-745675 (Clockwise)

Preceding gene: 29141166

Following gene: 29141169

Centisome position: 15.53

GC content: 54.68

Gene sequence:

>1368_bases
ATGGAGAGTTGCCTTGATATATTCAAAATAGTAATAGGTCCATCCAGCTCACGTACCGTAGGGCCGATGCGCGCCGCCTG
TCACTTTATTTCATTGCTCAGAGAACAAGAGACGTTGCCGCTAATTCGGGAAATTGAAATCGAGCTGTATGGCGCGTTAT
CGTTAAGCCGCAAGTGCCACAATGTGGATACCGCCCTGTATCTTGGGCTGCTGGGTTGCCAGCCGGAGAATGTCGATCTC
CGTTCGCATATGGCGGTGATTAAGCGTGCGGAAAATGAAAACAAAATCGAACTCCCGCTCTCTGACGCGGGCGGAATCAC
GATAAAAGTCAAGATTATCGCCAATCACCAGGCGCATCCAGGCCATCCTTATGCCATGACGTTTTGCGCCAGGGATGATT
ATTTTACGGTGTATGAAGAGACCTGGTTTTCTACCGGCGCCGGGCAGGTTCGTAAACATGGCGAGCCGCTGACGCCATCG
CTTCCTTTGCGTACAGTGTCGCCCTTTGAATTTAGTCATGCCGCGCAGTTGCTGGCGCTGTGTCGGCGTAACGGCCTGTC
CGTGGCGGCGCTGATGATGAAAAATGAGCTGTGCCGCCACTCGCCACAGACGTTGCAGAATTATCTGGCGCAAATATGGG
ACGTGATGCAGCAGGCGGTTTATCGCGGCCTGCATACTGAGGGGGTATTACCCGGTCCCTATCAGGTACCGCGGCGCGCC
TGTGCGTTACATAAGACGTTACAGGCTAACCGCTCCGCCAGCGATTTTTTAACCGCGCTGAACTGGGTCAATGCCTTCGC
GATTGCGGTAAGCGAAGAAAATGCCAGCGGCGGACAGATTGTTACCGCGCCAACCAATGGCGCGTGCGGCATCATTCCGG
CAGCGCTCTGCTGGTATGATAAATTTGTCACGCCGCTGGAGCCCGGTGCTCTGACCCGTTTCTTCCTGACCGCCGCCGCT
ATCGCGATGCTGTTTAAACAAAACGCCTCTATTCTGGGATCTGAAGTTGGCTGTCAGGGGGAAATCGGCGTGGCGTGCTC
AATGGCGGCGGCGGGCCTGGCTGAACTGATGGGTGCATCCGTGGAGCAAACGCTGAGCGCCGCTGAAATTGCCATGGAAC
ATCATCTGGGATTGACCTGCGATCCGCTGGGCGGGCAGGTACAAATTCCCTGCATAGAGAGAAATGCCATCTCTGCCGTG
AAAGCGATAAACGCGGCGACGATGGCGATGAGTCGCGTAAGCGAACCCTGTATTTCGCTCGATGAGATCATTGCTGCGAT
GTACGAGACCGGTAAAGACATGAGCGCTAAATACCGTGAAACGTATCATGGTTCGCTGGGGAAAATTCAGCCGCGCAAGA
GAGGGTAA

Upstream 100 bases:

>100_bases
GTAAAGTTCAGACACAAAAGGTATCACTTTTGATATGCCAACTGTGCGAGGATGTTATTTATTACTGAACGCGAATGAGA
CTGAAAGGATTGATATAACG

Downstream 100 bases:

>100_bases
CAGCGTGAAATACAATACGATGAATAACGATGAGATTATCCTGTCGTTGTGCGCCCGCTTAAAGGAGACGCGTCTGTCTC
TTGCGATGACCCAGCAGCAG

Product: L-serine dehydratase

Products: NA

Alternate protein names: SDH 1; L-serine deaminase 1; L-SD1 [H]

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MESCLDIFKIVIGPSSSRTVGPMRAACHFISLLREQETLPLIREIEIELYGALSLSRKCHNVDTALYLGLLGCQPENVDL
RSHMAVIKRAENENKIELPLSDAGGITIKVKIIANHQAHPGHPYAMTFCARDDYFTVYEETWFSTGAGQVRKHGEPLTPS
LPLRTVSPFEFSHAAQLLALCRRNGLSVAALMMKNELCRHSPQTLQNYLAQIWDVMQQAVYRGLHTEGVLPGPYQVPRRA
CALHKTLQANRSASDFLTALNWVNAFAIAVSEENASGGQIVTAPTNGACGIIPAALCWYDKFVTPLEPGALTRFFLTAAA
IAMLFKQNASILGSEVGCQGEIGVACSMAAAGLAELMGASVEQTLSAAEIAMEHHLGLTCDPLGGQVQIPCIERNAISAV
KAINAATMAMSRVSEPCISLDEIIAAMYETGKDMSAKYRETYHGSLGKIQPRKRG

Sequences:

>Translated_455_residues
MESCLDIFKIVIGPSSSRTVGPMRAACHFISLLREQETLPLIREIEIELYGALSLSRKCHNVDTALYLGLLGCQPENVDL
RSHMAVIKRAENENKIELPLSDAGGITIKVKIIANHQAHPGHPYAMTFCARDDYFTVYEETWFSTGAGQVRKHGEPLTPS
LPLRTVSPFEFSHAAQLLALCRRNGLSVAALMMKNELCRHSPQTLQNYLAQIWDVMQQAVYRGLHTEGVLPGPYQVPRRA
CALHKTLQANRSASDFLTALNWVNAFAIAVSEENASGGQIVTAPTNGACGIIPAALCWYDKFVTPLEPGALTRFFLTAAA
IAMLFKQNASILGSEVGCQGEIGVACSMAAAGLAELMGASVEQTLSAAEIAMEHHLGLTCDPLGGQVQIPCIERNAISAV
KAINAATMAMSRVSEPCISLDEIIAAMYETGKDMSAKYRETYHGSLGKIQPRKRG
>Mature_455_residues
MESCLDIFKIVIGPSSSRTVGPMRAACHFISLLREQETLPLIREIEIELYGALSLSRKCHNVDTALYLGLLGCQPENVDL
RSHMAVIKRAENENKIELPLSDAGGITIKVKIIANHQAHPGHPYAMTFCARDDYFTVYEETWFSTGAGQVRKHGEPLTPS
LPLRTVSPFEFSHAAQLLALCRRNGLSVAALMMKNELCRHSPQTLQNYLAQIWDVMQQAVYRGLHTEGVLPGPYQVPRRA
CALHKTLQANRSASDFLTALNWVNAFAIAVSEENASGGQIVTAPTNGACGIIPAALCWYDKFVTPLEPGALTRFFLTAAA
IAMLFKQNASILGSEVGCQGEIGVACSMAAAGLAELMGASVEQTLSAAEIAMEHHLGLTCDPLGGQVQIPCIERNAISAV
KAINAATMAMSRVSEPCISLDEIIAAMYETGKDMSAKYRETYHGSLGKIQPRKRG

Specific function: Deaminates also threonine, particularly when it is present in high concentration [H]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-sulfur dependent L-serine dehydratase family [H]

Homologues:

Organism=Escherichia coli, GI1788116, Length=453, Percent_Identity=48.7858719646799, Blast_Score=436, Evalue=1e-123,
Organism=Escherichia coli, GI48994925, Length=450, Percent_Identity=50.4444444444444, Blast_Score=434, Evalue=1e-123,
Organism=Escherichia coli, GI1789161, Length=453, Percent_Identity=50.1103752759382, Blast_Score=430, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004644
- InterPro:   IPR005130
- InterPro:   IPR005131 [H]

Pfam domain/function: PF03313 SDH_alpha; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 49343; Mature: 49343

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESCLDIFKIVIGPSSSRTVGPMRAACHFISLLREQETLPLIREIEIELYGALSLSRKCH
CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEHHHHHHHHH
NVDTALYLGLLGCQPENVDLRSHMAVIKRAENENKIELPLSDAGGITIKVKIIANHQAHP
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCCC
GHPYAMTFCARDDYFTVYEETWFSTGAGQVRKHGEPLTPSLPLRTVSPFEFSHAAQLLAL
CCCEEEEEEECCCCEEEEHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
CRRNGLSVAALMMKNELCRHSPQTLQNYLAQIWDVMQQAVYRGLHTEGVLPGPYQVPRRA
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
CALHKTLQANRSASDFLTALNWVNAFAIAVSEENASGGQIVTAPTNGACGIIPAALCWYD
HHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHH
KFVTPLEPGALTRFFLTAAAIAMLFKQNASILGSEVGCQGEIGVACSMAAAGLAELMGAS
HHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
VEQTLSAAEIAMEHHLGLTCDPLGGQVQIPCIERNAISAVKAINAATMAMSRVSEPCISL
HHHHHHHHHHHHHHCCCCEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCH
DEIIAAMYETGKDMSAKYRETYHGSLGKIQPRKRG
HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MESCLDIFKIVIGPSSSRTVGPMRAACHFISLLREQETLPLIREIEIELYGALSLSRKCH
CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEHHHHHHHHH
NVDTALYLGLLGCQPENVDLRSHMAVIKRAENENKIELPLSDAGGITIKVKIIANHQAHP
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCCC
GHPYAMTFCARDDYFTVYEETWFSTGAGQVRKHGEPLTPSLPLRTVSPFEFSHAAQLLAL
CCCEEEEEEECCCCEEEEHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
CRRNGLSVAALMMKNELCRHSPQTLQNYLAQIWDVMQQAVYRGLHTEGVLPGPYQVPRRA
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
CALHKTLQANRSASDFLTALNWVNAFAIAVSEENASGGQIVTAPTNGACGIIPAALCWYD
HHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHH
KFVTPLEPGALTRFFLTAAAIAMLFKQNASILGSEVGCQGEIGVACSMAAAGLAELMGAS
HHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
VEQTLSAAEIAMEHHLGLTCDPLGGQVQIPCIERNAISAVKAINAATMAMSRVSEPCISL
HHHHHHHHHHHHHHCCCCEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCH
DEIIAAMYETGKDMSAKYRETYHGSLGKIQPRKRG
HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2504697; 8436113; 9097040; 9278503 [H]