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The map label for this gene is napF [H]

Identifier: 29141117

GI number: 29141117

Start: 688117

End: 688608

Strand: Direct

Name: napF [H]

Synonym: t0604

Alternate gene names: 29141117

Gene position: 688117-688608 (Clockwise)

Preceding gene: 29141115

Following gene: 29141118

Centisome position: 14.36

GC content: 56.71

Gene sequence:

>492_bases
ATGGTTGATTTATCCCGTCGAAGCATGTTGACCGGCAGTTGGCGCAACGCCAGCAATGGGATTCTTCCGCCGTGGGCCAG
AGAAACGACCTATTTTCTCGCACATTGTCTGCGTTGCGACGCCTGCATCCAGGCGTGTGAGGCCGACATCCTGCAGCGAG
GGACGGGGGGATATCCGAGCGTAAATTTCAAACGGGGCGAGTGCAGCTTTTGTTATGCCTGTGCGCAGGCCTGTCCCGAA
TCTCTCTTTCTTCCGCGCCGCACCAGGGCCTGGGATCTGATTTTTACACTCACGGAAAACTGCCTCGCCAGGCAGTCGGT
TGAATGCCATCGTTGCCTGGACAGTTGTGAACCTATGGCCATTACCTTTCGTCCCACGTTATCCGGTATTTACCAGCCGC
AGCTTGACTCGCAGGCCTGTAACGGATGCGGGGCGTGTGTGGCTATCTGTCCCGTGTCAGCCATCAAAGCGGAGAACCAC
CATGCGCACTAA

Upstream 100 bases:

>100_bases
CCTGAAATATCTTATTTACAAAAATAACTACTCATAAATTGTACGGTTTTTATTGGCATTCACTCCCTATGGAAGCGTGT
CGTTATGGAAGGGCGATATC

Downstream 100 bases:

>100_bases
CTGGCAGGTCTGTAGCCTGGTCGTGCAGGCCAAAAGTCAGAACATCGCCGCCATTGGCACACAGTTGAACACGTTGCCGG
GTTGCGAAGTCGCGTTAAGC

Product: ferredoxin-type protein

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MVDLSRRSMLTGSWRNASNGILPPWARETTYFLAHCLRCDACIQACEADILQRGTGGYPSVNFKRGECSFCYACAQACPE
SLFLPRRTRAWDLIFTLTENCLARQSVECHRCLDSCEPMAITFRPTLSGIYQPQLDSQACNGCGACVAICPVSAIKAENH
HAH

Sequences:

>Translated_163_residues
MVDLSRRSMLTGSWRNASNGILPPWARETTYFLAHCLRCDACIQACEADILQRGTGGYPSVNFKRGECSFCYACAQACPE
SLFLPRRTRAWDLIFTLTENCLARQSVECHRCLDSCEPMAITFRPTLSGIYQPQLDSQACNGCGACVAICPVSAIKAENH
HAH
>Mature_163_residues
MVDLSRRSMLTGSWRNASNGILPPWARETTYFLAHCLRCDACIQACEADILQRGTGGYPSVNFKRGECSFCYACAQACPE
SLFLPRRTRAWDLIFTLTENCLARQSVECHRCLDSCEPMAITFRPTLSGIYQPQLDSQACNGCGACVAICPVSAIKAENH
HAH

Specific function: Involved in electron transfer [H]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1788536, Length=162, Percent_Identity=75.9259259259259, Blast_Score=258, Evalue=1e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004496 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 18041; Mature: 18041

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
11.7 %Cys+Met (Translated Protein)
9.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
11.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDLSRRSMLTGSWRNASNGILPPWARETTYFLAHCLRCDACIQACEADILQRGTGGYPS
CCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VNFKRGECSFCYACAQACPESLFLPRRTRAWDLIFTLTENCLARQSVECHRCLDSCEPMA
CCEECCCHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEE
ITFRPTLSGIYQPQLDSQACNGCGACVAICPVSAIKAENHHAH
EEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVDLSRRSMLTGSWRNASNGILPPWARETTYFLAHCLRCDACIQACEADILQRGTGGYPS
CCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VNFKRGECSFCYACAQACPESLFLPRRTRAWDLIFTLTENCLARQSVECHRCLDSCEPMA
CCEECCCHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEE
ITFRPTLSGIYQPQLDSQACNGCGACVAICPVSAIKAENHHAH
EEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]