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The map label for this gene is ompC

Identifier: 29141111

GI number: 29141111

Start: 681183

End: 682319

Strand: Direct

Name: ompC

Synonym: t0597

Alternate gene names: 29141111

Gene position: 681183-682319 (Clockwise)

Preceding gene: 29141108

Following gene: 29141112

Centisome position: 14.22

GC content: 53.12

Gene sequence:

>1137_bases
ATGAAAGTTAAAGTACTGTCCCTCCTGGTACCAGCTCTGCTGGTGGCGGGCGCAGCGAATGCGGCTGAAATTTATAATAA
AGACGGCAACAAATTAGACCTGTTTGGTAAAGTTGATGGCCTGCACTACTTCTCTGACGACAAAGGCAGCGACGGCGACC
AGACCTACATGCGTATCGGCTTCAAAGGCGAAACGCAGGTTAACGATCAGCTGACCGGTTATGGCCAGTGGGAATATCAG
ATTCAGGGCAACCAGACTGAAGGCAGCAACGACTCCTGGACGCGTGTGGCGTTTGCGGGTCTGAAATTCGCTGACGCAGG
TTCCTTCGATTATGGTCGTAACTACGGCGTAACCTATGACGTGACCTCCTGGACCGACGTTCTGCCGGAGTTCGGCGGCG
ACACCTACGGCGCTGACAACTTTATGCAGCAGCGTGGTAACGGCTATGCTACCTACCGTAACACCGACTTCTTCGGTCTG
GTGGATGGTCTGGACTTCGCGTTGCAGTATCAGGGCAAAAACGGCAGCGTGAGCGGTGAAAACACCAACGGTCGCAGCCT
GCTGAACCAGAACGGCGACGGTTACGGCGGATCGCTGACTTATGCAATCGGCGAAGGCTTCTCTGTCGGTGGCGCTATCA
CCACGTCTAAACGTACTGCCGATCAGAACAACACCGCTAACGCTCGCCTGTATGGTAACGGCGATCGCGCCACGGTTTAC
ACCGGCGGCCTGAAATACGATGCGAACAACATCTATCTGGCAGCGCAGTATTCTCAGACCTATAACGCAACCCGTTTTGG
TACCTCTAACGGCAGCAACCCGTCCACCTCTTACGGTTTTGCCAACAAAGCGCAGAACTTTGAAGTGGTTGCTCAGTACC
AGTTCGACTTTGGTCTGCGTCCGTCTGTGGCTTACCTGCAGTCTAAAGGTAAGGACATCAGCAACGGCTACGGCGCCAGC
TATGGCGACCAGGACATCGTAAAATACGTTGATGTCGGCGCGACTTACTACTTCAACAAAAACATGTCCACCTATGTTGA
TTACAAAATCAACCTGCTGGATAAAAACGACTTTACCCGCGATGCGGGCATCAACACCGACGACATCGTAGCGCTGGGTC
TGGTTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TATTTTTGCGGAGAATGGACTTGCCGACTGGTTAATGAGGGTTAACCAGTAAGCAGTGGCATAAAAAAGCAATAAAGGCA
TATAACAGAGGGTTAATAAC

Downstream 100 bases:

>100_bases
TCAGCAAAAGATGTTGCTAAAGGGCCTGCGGGCCCTTTTTTCATGCCTTATTCCGGCGTACAAATACGACGTTTTGATAT
ACGCTTGCGTCCATTCGAAT

Product: outer membrane porin protein C

Products: NA

Alternate protein names: Porin ompC

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQ
IQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGL
VDGLDFALQYQGKNGSVSGENTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTANARLYGNGDRATVY
TGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPSTSYGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGAS
YGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF

Sequences:

>Translated_378_residues
MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQ
IQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGL
VDGLDFALQYQGKNGSVSGENTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTANARLYGNGDRATVY
TGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPSTSYGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGAS
YGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF
>Mature_378_residues
MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQ
IQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGL
VDGLDFALQYQGKNGSVSGENTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTANARLYGNGDRATVY
TGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPSTSYGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGAS
YGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF

Specific function: Forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family

Homologues:

Organism=Escherichia coli, GI1788544, Length=384, Percent_Identity=78.90625, Blast_Score=580, Evalue=1e-167,
Organism=Escherichia coli, GI1787641, Length=388, Percent_Identity=67.2680412371134, Blast_Score=456, Evalue=1e-130,
Organism=Escherichia coli, GI1786436, Length=381, Percent_Identity=57.2178477690289, Blast_Score=400, Evalue=1e-112,
Organism=Escherichia coli, GI1787160, Length=386, Percent_Identity=58.0310880829015, Blast_Score=391, Evalue=1e-110,

Paralogues:

None

Copy number: 6020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 19068 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): OMPC_SALTI (P0A264)

Other databases:

- EMBL:   X07835
- EMBL:   AL627274
- EMBL:   AE014613
- PIR:   JQ0119
- RefSeq:   NP_456812.1
- RefSeq:   NP_804453.1
- PDB:   1IIV
- PDBsum:   1IIV
- ProteinModelPortal:   P0A264
- SMR:   P0A264
- PRIDE:   P0A264
- GeneID:   1069667
- GeneID:   1248821
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t0597
- KEGG:   sty:STY2493
- HOGENOM:   HBG673855
- OMA:   ASITYAA
- ProtClustDB:   PRK10554
- BioCyc:   SENT209261:T0597-MONOMER
- BioCyc:   SENT220341:STY2493-MONOMER
- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702
- Gene3D:   G3DSA:2.40.160.10
- PRINTS:   PR00183
- PRINTS:   PR00182

Pfam domain/function: PF00267 Porin_1

EC number: NA

Molecular weight: Translated: 41239; Mature: 41239

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIG
CEEEHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYD
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECEEEECCCCCCCCCCCCEEEE
VTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKNGSVSGE
CCCHHHHHHHHCCCCCCCHHHHHHCCCEEEEEECCCEEEEECCCEEEEEECCCCCCCCCC
NTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTANARLYGNGDRATVY
CCCCCHHHCCCCCCCCCEEEEEECCCEECCCEEEECCCCCCCCCCCEEEEEECCCEEEEE
TGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPSTSYGFANKAQNFEVVAQYQFDFGLR
ECCEEECCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
PSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTR
CCHHHHHHCCCCCCCCCCCCCCCHHHHHHEECCEEEEECCCCCEEEEEEEEEECCCCCCC
DAGINTDDIVALGLVYQF
CCCCCHHHEEEEEEEECC
>Mature Secondary Structure
MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIG
CEEEHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYD
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECEEEECCCCCCCCCCCCEEEE
VTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKNGSVSGE
CCCHHHHHHHHCCCCCCCHHHHHHCCCEEEEEECCCEEEEECCCEEEEEECCCCCCCCCC
NTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTANARLYGNGDRATVY
CCCCCHHHCCCCCCCCCEEEEEECCCEECCCEEEECCCCCCCCCCCEEEEEECCCEEEEE
TGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPSTSYGFANKAQNFEVVAQYQFDFGLR
ECCEEECCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
PSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTR
CCHHHHHHCCCCCCCCCCCCCCCHHHHHHEECCEEEEECCCCCEEEEEEEEEECCCCCCC
DAGINTDDIVALGLVYQF
CCCCCHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2684785; 3412902; 11677608; 12644504; 10405180