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The map label for this gene is rhmA [H]

Identifier: 29141089

GI number: 29141089

Start: 650272

End: 651075

Strand: Direct

Name: rhmA [H]

Synonym: t0574

Alternate gene names: 29141089

Gene position: 650272-651075 (Clockwise)

Preceding gene: 29141088

Following gene: 29141090

Centisome position: 13.57

GC content: 54.35

Gene sequence:

>804_bases
ATGAACGCATTGTTATCAAATCCTTTTAAAGAAGGATTACGTAAAAGGGATACGCAAATTGGTTTGTGGCTCAGTTCAAC
CACCTCTTATATGGCGGAGATTGCGGCGACGTCGGGTTATGACTGGTTGTTAATAGATGGCGAGCACGCGCCTAATACGG
TGCAGGACTTGTATCATCAGTTACAGGCCATCGCCCCATACGCCAGCCAGCCGGTGATTCGCCCGATCGAGGGAAGTAAA
GCGCTCATTAAACAGGTACTGGACATCGGGGCGCAAACGCTACTGATCCCGATGGTTGACACCGCAGAACAGGCGCGCCA
GGTCGTTTCCGCTACCCGATACCCGCCGTTGGGGCAACGAGGCGTTGGCGCGAGCGTGGCGCGTGCGGCGCGCTGGGGGA
GAATCGACAACTATATGGCACAGGCCAATGAGTCGCTCTGCCTGTTGGTGCAGGTTGAAAGCAAAGTGGCGCTGGAAAAC
CTTGACGCGATTCTGGAGGTTGAAGGCATTGATGGCGTCTTTATCGGTCCGGCAGATCTCTCTGCTTCATTGGGTTACCC
CGATAATGCCGGACACCCGGAAGTGCAGCGAATCATTGAATCGTGTATTTATCGTATTCGCGCCGCCGGAAAAGCGGCGG
GTTTTTTGGCGGTCGATCCGGCAATGGCGCAGAAATGTCTGGCGTGGGGCGCGAATTTTGTCGCGGTCGGGGTAGATACG
ATGCTCTACACCGAGGCGCTGGACAGCAGGTTGGCGATGTTTAAATCTGTTCAGTCAGTAAGCACGGCAAAACGTAGTTA
TTGA

Upstream 100 bases:

>100_bases
ATCATTGGCTCATTAATTATCTTCACGCTGAGCGTTAATCGTCCGGTGGCGCAATCCGGCGCTGCGCATCATTAATCTTA
TCTACGTTGTAAGGATCGCT

Downstream 100 bases:

>100_bases
GAAAAATGCCGGATGGCACGTATGCCTTACGCGTACGTTTTAGCGCCAATCGGTATAGCCTGGCAATACGTCAGGAGGTC
TGCGCGATGATGGCGCTAAA

Product: aldolase

Products: NA

Alternate protein names: KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MNALLSNPFKEGLRKRDTQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTVQDLYHQLQAIAPYASQPVIRPIEGSK
ALIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPLGQRGVGASVARAARWGRIDNYMAQANESLCLLVQVESKVALEN
LDAILEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQKCLAWGANFVAVGVDT
MLYTEALDSRLAMFKSVQSVSTAKRSY

Sequences:

>Translated_267_residues
MNALLSNPFKEGLRKRDTQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTVQDLYHQLQAIAPYASQPVIRPIEGSK
ALIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPLGQRGVGASVARAARWGRIDNYMAQANESLCLLVQVESKVALEN
LDAILEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQKCLAWGANFVAVGVDT
MLYTEALDSRLAMFKSVQSVSTAKRSY
>Mature_267_residues
MNALLSNPFKEGLRKRDTQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTVQDLYHQLQAIAPYASQPVIRPIEGSK
ALIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPLGQRGVGASVARAARWGRIDNYMAQANESLCLLVQVESKVALEN
LDAILEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQKCLAWGANFVAVGVDT
MLYTEALDSRLAMFKSVQSVSTAKRSY

Specific function: Catalyzes the reversible retro-aldol cleavage of 2-keto- 3-deoxy-L-rhamnonate (KDR) to pyruvate and lactaldehyde [H]

COG id: COG3836

COG function: function code G; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HpcH/HpaI aldolase family. KDR aldolase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788578, Length=267, Percent_Identity=86.8913857677903, Blast_Score=478, Evalue=1e-136,
Organism=Escherichia coli, GI1789514, Length=254, Percent_Identity=43.3070866141732, Blast_Score=220, Evalue=6e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005000
- InterPro:   IPR015813 [H]

Pfam domain/function: PF03328 HpcH_HpaI [H]

EC number: NA

Molecular weight: Translated: 28842; Mature: 28842

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALLSNPFKEGLRKRDTQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTVQDLYHQ
CCCCCCCHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
LQAIAPYASQPVIRPIEGSKALIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPLGQR
HHHHCCCCCCCCEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCC
GVGASVARAARWGRIDNYMAQANESLCLLVQVESKVALENLDAILEVEGIDGVFIGPADL
CCCHHHHHHHHHCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHEEECCCCEEEECCCCC
SASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQKCLAWGANFVAVGVDT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCEEEEHHHH
MLYTEALDSRLAMFKSVQSVSTAKRSY
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNALLSNPFKEGLRKRDTQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTVQDLYHQ
CCCCCCCHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
LQAIAPYASQPVIRPIEGSKALIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPLGQR
HHHHCCCCCCCCEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCC
GVGASVARAARWGRIDNYMAQANESLCLLVQVESKVALENLDAILEVEGIDGVFIGPADL
CCCHHHHHHHHHCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHEEECCCCEEEECCCCC
SASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQKCLAWGANFVAVGVDT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCEEEEHHHH
MLYTEALDSRLAMFKSVQSVSTAKRSY
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA