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The map label for this gene is yfcD

Identifier: 29141033

GI number: 29141033

Start: 590728

End: 591282

Strand: Direct

Name: yfcD

Synonym: t0518

Alternate gene names: 29141033

Gene position: 590728-591282 (Clockwise)

Preceding gene: 29141032

Following gene: 29141035

Centisome position: 12.33

GC content: 54.41

Gene sequence:

>555_bases
ATGGTGGAACAGCGTCGTTTGGCAAGTACGGAATGGGTGGATATTGTGAATGAAGACAATGAAGTCATTGCACAGTCCAG
CCGGGAACAGATGCGTGCGCAACGCTTACGGCATCGTGCGACGTATATCGTCGTTCATGATGGTATGGGTAAAATTCTGG
TGCAGCGTCGTACCGAAACAAAAGATTTTTTGCCCGGTATGTTAGATGCTACCGCAGGCGGCGTGGTCCAGGCTGATGAG
CAGCTACTGGAATCTGCCCGCCGCGAAGCGGAAGAAGAGTTGGGTATTGCAGGCGTGCCGTTTGCCGAACACGGTCTGTT
TTACTTTGAAGACCAACATTGCCGGGTTTGGGGCGCGCTGTTTAGCTGCGTTTCCCACGGGCCTTTCGCGCTTCAGGAAG
ATGAAGTCAGCGAAGTGTGTTGGCTGACTCCGGAGGAGATCACCGCGCGCTGTGATGAATTTACGCCGGACTCGCTCAAA
GCGCTGGCGCTGTGGATGACCCGCAACGCCAAAAACGAAGCCGCGCTTCAGGAGAAACCGGAAGAGACGGAATAA

Upstream 100 bases:

>100_bases
TCAATGATCAAAGTATCATTGCGCAGGTTGCAATTAACTCGTAATTTACCTCACAAACGTAAATGCGCCGTAAGAGCGCC
AGAAATAAGAAGGTTTCCTG

Downstream 100 bases:

>100_bases
GCGTTTTAGCAGCTTTCCCGCATACATAAACTGGAGGCGATAGATTTTCGATCGCTCCAGTTTCCCTGATTTAACCTTTC
CAACAGCGCCCGTCCGGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADE
QLLESARREAEEELGIAGVPFAEHGLFYFEDQHCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLK
ALALWMTRNAKNEAALQEKPEETE

Sequences:

>Translated_184_residues
MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADE
QLLESARREAEEELGIAGVPFAEHGLFYFEDQHCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLK
ALALWMTRNAKNEAALQEKPEETE
>Mature_184_residues
MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADE
QLLESARREAEEELGIAGVPFAEHGLFYFEDQHCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLK
ALALWMTRNAKNEAALQEKPEETE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain

Homologues:

Organism=Escherichia coli, GI1788637, Length=180, Percent_Identity=92.7777777777778, Blast_Score=324, Evalue=3e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFCD_SALTI (P65560)

Other databases:

- EMBL:   AL627274
- EMBL:   AE014613
- RefSeq:   NP_456888.1
- RefSeq:   NP_804375.1
- ProteinModelPortal:   P65560
- SMR:   P65560
- PRIDE:   P65560
- GeneID:   1069486
- GeneID:   1248901
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t0518
- KEGG:   sty:STY2576
- HOGENOM:   HBG696017
- OMA:   PYCPDSL
- ProtClustDB:   PRK15393
- BioCyc:   SENT209261:T0518-MONOMER
- BioCyc:   SENT220341:STY2576-MONOMER
- InterPro:   IPR000086
- InterPro:   IPR015797
- Gene3D:   G3DSA:3.90.79.10

Pfam domain/function: PF00293 NUDIX; SSF55811 NUDIX_hydrolase

EC number: 3.6.-.- [C]

Molecular weight: Translated: 20907; Mature: 20907

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS51462 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIVVHDGMGKILVQRRTET
CCCCHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHCCCC
KDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGLFYFEDQHCRVWGAL
HHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEECCHHHHHHHH
FSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMTRNAKNEAALQEKP
HHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHCCC
EETE
CCCC
>Mature Secondary Structure
MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIVVHDGMGKILVQRRTET
CCCCHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHCCCC
KDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGLFYFEDQHCRVWGAL
HHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEECCHHHHHHHH
FSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMTRNAKNEAALQEKP
HHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHCCC
EETE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504