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The map label for this gene is ygdI [H]

Identifier: 29140623

GI number: 29140623

Start: 93416

End: 93646

Strand: Direct

Name: ygdI [H]

Synonym: t0081

Alternate gene names: 29140623

Gene position: 93416-93646 (Clockwise)

Preceding gene: 29140622

Following gene: 29140624

Centisome position: 1.95

GC content: 48.48

Gene sequence:

>231_bases
ATGCAAAAACGTCTTATGACCGCACTGTTTACCGCAGCAACACTATTCACCGTCGCAGGATGCTCTTCTAACCAGGCGGT
TGAAACCACGGATGGCAAAACTATTGTCACCGACGGGAAACCCGAGGTCGATAACGATACCGGTATGGTGTCTTACAAAA
ACGCCGCCACCGGGAAAACCGAACAGATTAACCGCGATCAGCTGAAAAATATGAGCGAGCTGGATAATTAA

Upstream 100 bases:

>100_bases
AACCCTCGTTAAGAGTGTTCTGCATTTCTCCCTGCTTTTCGCCAATAACGCTACAGTTAACAGTCACATGCTAAAACAAC
TGAAAAGCAGGGAGAACACC

Downstream 100 bases:

>100_bases
TTCAATTTTTTCTGGTTAGCCGCGCAATAATATTCTCTCTTTATGCGCATCCATTTATTCCCATGCGAATAAACGGATGC
CTGAACTGGCAGGGACGCCG

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MQKRLMTALFTAATLFTVAGCSSNQAVETTDGKTIVTDGKPEVDNDTGMVSYKNAATGKTEQINRDQLKNMSELDN

Sequences:

>Translated_76_residues
MQKRLMTALFTAATLFTVAGCSSNQAVETTDGKTIVTDGKPEVDNDTGMVSYKNAATGKTEQINRDQLKNMSELDN
>Mature_76_residues
MQKRLMTALFTAATLFTVAGCSSNQAVETTDGKTIVTDGKPEVDNDTGMVSYKNAATGKTEQINRDQLKNMSELDN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygdR [H]

Homologues:

Organism=Escherichia coli, GI87082162, Length=70, Percent_Identity=54.2857142857143, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1789198, Length=71, Percent_Identity=43.6619718309859, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010305 [H]

Pfam domain/function: PF06004 DUF903 [H]

EC number: NA

Molecular weight: Translated: 8217; Mature: 8217

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKRLMTALFTAATLFTVAGCSSNQAVETTDGKTIVTDGKPEVDNDTGMVSYKNAATGKT
CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEECCCCCCCC
EQINRDQLKNMSELDN
CCCCHHHHHHHHHCCC
>Mature Secondary Structure
MQKRLMTALFTAATLFTVAGCSSNQAVETTDGKTIVTDGKPEVDNDTGMVSYKNAATGKT
CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEECCCCCCCC
EQINRDQLKNMSELDN
CCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]