| Definition | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. |
|---|---|
| Accession | NC_004578 |
| Length | 6,397,126 |
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Identifier: 28871227
GI number:
Start: 4594116
End: 4598948
Strand: Direct
Name: Not Available
Synonym: PSPTO_4084
Alternate gene names: NA
Gene position: NA
Preceding gene: 28871225
Following gene: 28871231
Centisome position: NA
GC content: NA
Gene sequence:
>4833_bases ATGATATTCAACACAAAAGATTTTGGAGCTTTGGGCGACGGCGTCACGAACGATACAGCAGCAATTCAGGCTACGATCGA TGCGGCCGCAGCGGCGGGGGGTGGTGAAGTGGTTCTGGCGGCAGGGACCTACATCGTGTCCGGTGGCGAAGAGCCTTCCG ATGGCTGCCTGATGCTCAAGAGCAACGTCACCCTGTCAGGTGCCGGCATGGGCGAGACGATCATCAAACTCGCGGACGGC TCGGACACCAAAGTCACCGGCATCGTCCGCTCGGCCTACGGTGAAGAAACCCACGACTTCGGCATGAACAACCTCACGCT GGACGGTAATCGGGACGCCACCACCGGCAAGGTGGACGGCTGGTTCAACGGGTACATTCCGGGCTCTGACGGCAAGGACT CGAACGTCACCCTGGACAGCGTCGAAATCAAGGATTGCTCGGGATACGGGTTCGACCCGCACGAGCAGACCGTCAATATG GTGATCAAGAACAGCGTGTCCCACGGCAACGGCCTGGACGGCTTCGTGGCCGATTACCTGAGCGACAGCGTGTTCGAGAA CAACGTCGCGTATAACAACGATCGTCACGGCTTCAACGTGGTGACCAGCACCCACGACTTCACCCTGAGCAACAATATCG CCTACGGCAATGGCAGCACCGGCATCGTGGTGCAGCGCGGCAGCGAAAACATTCCTTCCCCCGCCAACATCACCATCACC GGCGGCGCGGTCTATGGCAACGGTGCCGAAGGCGTGCTGATCAAGCTGTCCAGCCAGGTGTCGGTCAGCGGCCTGGACAT TCACGACAACGGCAGCGCGGGCGTGCGCATTTATGGCAGTTCCGCGGTGGATGTCTTTGATAACACGCTGAGCAACAACT CCCTCGGCGCACCGGTGCCGGAGATCATCATTCAGTCCTATGACGACACCACTGGTGTCTCCGGCAAGTACTTCAACGGC AGTGACAACCTGATCCGTGGCAACCTGATCACCGGCAGCGACAACTCTACCTACGGCGTGGCCGAGCGCAACGAAGACGG CACCGATCGCAACAGCATCGTCGGCAATACCATCAGCCACACCAGTAAAGGCCTGACGCTGGTTTACGGTGATGGCAGCT TTGCGGGCGATGCGTTCCCGCTGGTCACCGTGCTGGGCACAGAGGCCAACGACGTTATTACCGGCGGTGCGGCACACGAG CTGATCTTCGGTCTGGCGGGCAAAGACACGCTCAACGGCGGCACGGGCGACGACATTCTGGTCGGCGGTGCCGGGGCCGA CAAGCTGAACGGCGGCGCGGGTGCCGATACCTTTCGCTTCGATCAACTGACCGACAGCTATCGCACGGCGACCACCAGCG CTACCGACCTGCTCACTGACTTCAACGTCAGCCAGGACCGCATCGATCTGGCGAACCTGGGCTTCACCGGGCTGGGCAGC GGCAAGAATGGCACGCTGAATATCAGCTACAACGCCACCTTGGACCGCACCTATGTCAAGTCTCTGGACGTCGATGCAAG CGGCAACCGGTTCGAGCTGGGCCTGACCGGCAACCTGAAAGATACACTCAATGCCAGTCACTTCATCTTCCAGCGCGTGA CGGAAGGCACCGCAGGTGGCGATACCCTGACCGGTACTGCGGGCAACGATGTCATCAACGGCAATGCCGGCGTGGACCGC ATCGATGGCGGCGCGGGGGCAGACACGATCAATGGCGGTGCCGATGCCGACACACTGACCGGGGGCGCAGGTGCCGACGT TTTCGTCTACAGCTCGCGCCTGGACAGCTACCGCAATTACACCGCTGGCGGGCCGAAGCAGAGCGACACCATCGTTGACT TCAACGTCGCCGAAGACCGCATCGACCTTTCCGCCATTGGCCTGCGCGGGCCGGGCGATGGCAGCGCGAACACCCTTTAC CTGTCGCTGAACGGCGATGGCAGCAAAACCTACGTCAAGACCAATGCGGTTGACACCACCGGCAATCGTTTCGAGATCGC CCTGGAAGGCAATCTGCTCGACAAACTCGGCGCGTCCAACTTCATCTTCTCCAGCGCATCGGCCACCAATCAGGCACCGG TGCTCAACACGCCGCTGATGGACCAGATAGTTACCGAACTGAAACCGTTCTCGTACGCCGTGCAGCCTGGTAGTTTCAGC GACCCGGACAGCACCGCGCTGACCTACAGCGCGACACTGGCAGATAACAGCGCCCTGCCCGACTGGCTGAAATTCGACAG CAAGACCCTGACATTCAGCGGCACACCAGGTGGCACAGCTTCAGGGCTCTATTCCGTGCTGCTGACAGCCAGCGACGCGA CAGGCGCTTCGGTGGCGGACAGCTTCGCGATCAATGTGGGCAACGTCGCACCGGGCATCATCACCGGCACCGAAAGCGCC GAAGCGCTTTATGGCACCGAGGGTAACGACACATTGCTGGGCCTGGGTGGCGACGACACCTTGCGCGGCGATACCGGCGC CGACGTGCTCAACGGCGGAGCGGGCCGCGACGCTTTGTATGGCGGCGCCGATACTGACACGTTCGTCTACAGCACGCTCA CCGACAGCTACCGTGACTACGACGCAAGCGGGCTGACCGCGACGGACACAATCTTCGATTTCACCCCCGGTCAGGACAAG ATCGACGTCTCCGCCTTGGGCTTTCTGGGGCTGGGCAACGGAGAAAACCACACGCTGTACATGACGCTCAACGAGGCGGG CGACAAGACCTACGTCAAATCCGCTACTTCCGATGTCGAAGGCAATCGCTTTGAAATCGCCTTGAGCGGCAACCTGATCA ACACCCTGACTGACGCAGACTTTGTGTTTGGCCAACGTGAGTCTCAGGAGATTCTTTATTTGCCGACGCTGGGCCAGTCC AACGCGCGCCTGCTGCGCATGACCGAGGACGACAACCAGTCCGGCACCTCGGAAATGGCCAAGGACCTGACCCGCTATAC CGATTACGACGTGCGCAGCCAGTTCAACGACGCCAACGGTGATGCCATCGACCTGGCGGTAGGCGGCAGCACCGTCGTCG GTTACTCGACCGGCACCCCGGAAGAGCAGCGTATTTCCTGGTGGCTGACCGATACCGATCAACCTGGCCAGGCGCTGCTG CGTGCCACCGAGCTGCTTAAGGCGCAACTGGCGTCGTTGACGGCCATCGACAAAGTCACCACCGGCATTATCTGGGGTCA GGGCGAAGAAGCCGCTCAGGAAATAGCCCGGGCCACTGATAAACAAGCTGCGGCCGACCTGTACAAGGCATCGACCCTTA AGGTGTTCGACTACTTGCACGCGCAGATAGGCGACTTCACGGTGTACCTGGCAGAAACCGGCCATTACCAGGCACAGGCA GCCGAAGCACGCGGCTACCCTCAGGAAAAAATCAACGCCATTGTCGAAGGTGCGGGTTATGTCCGCGCCGCTCAGGAAGC CATCGCCAGCGAACGCAGCGACATCAAACTGGCGGTTGACTACACCGACCTGCCCTTGCGTTACGAGGTCAACTCGCTGG TTTACCCGGATGACGTCTGGCACCTGCATGAAGAGTCGGCAGAGATCGTCGGTCAGCGACTGGCCGACTTCATTGCCGAC GACCTGGGTTTCAGGGGCAACGCCAGTGACAACAATGACCCGGCGGCCATTTTTGCGGGCGGCCAGAACGAAGGTGGCAA CATTTTCGGCACCAGTGACGATGACACGCTGATCGGCAGCGCCGGCAACGACATACTGGACGGCGATCAGGGTGCAGACC AGATGACGGGAGGCGATGGCAACGACATCTATGTGGTCGACAACTCGCTGGATACCGTCACCGAGAGCAATGACTCGCCG TCGCAGGTCGATACCGTGGTGTCGTCTGTCAGCTGGACGCTGGGGGCCAATGTCGAAAATCTGCTGCTTACCGGCGTGTC TGCCATCGACGGCACCGGCAATGCGCTGAAAAACGTGATCACGGGTAACAGCAGCGACAACGTTGTGGACGGCGGAGCCG GAGGCGATTTGCTGAAAGGTGGCGACGGCTCCGACAGCTATTACGTCGATGACGTGGCAGACCGCGTGGTCGAGACCAAC AGCGATGCGTGGGTCGGCGGCGTCGATACGGTGTACAGCGCGCTGGCGAGTTATACGCTGGGGGCCCATCTGGAAAACAT CGCGATCACCCGTACAGACACTGCCAACGCCACCGGCAATGCCTTGGATAACGTGCTCTACGCGGGCGCTGGCGACAATG TTATGGGTGGGCGTGACGGCAATGACACGGCGTCGTACCTGTTCGCCAGCGCCGGGGTCACGGTCGCGCTGAACACCAGC GCCCAGCAAGCCACCGGCGGTTCTGGCCTGGACACCCTGAAAGGCACTGAAAACCTGACCGGCAGCCAGTTTGCCGACTC GCTGACGGGCAACAAGAACGCCAACGTGCTGAACGGTGGCGCTGGCAACGATACGTTGTCCGGGGGCGCAGGCGACGATG TGTTGATCGGGAGTTCCGGTGCGGACACTTTGATCGGTGGCACCGGGGCGGATCGCTATGTGTTCAACAGCATCGACGAG GTGGGCCGTGACGGCTTGCGCGACATCATCAATGGTTTCAAGGTGAGCGAAGGCGACAAACTGGATTTCACAGGCTTCGA TGCCCGACCGCTTACTGATACCCACGATGCGTTCACGTTCATCGGCAACTCGGCGTTCAGCGCCAACAACACCGGCGAGC TTCGCTTTGCCGATGGCGTGCTGTACGGCAATGTCGATGACAACACCGGGGCGGACTTCGAAATCCAGCTAACGGGTGTG CAGAGCCTGCAGGCGGCTGACGTCATCGTCTGA
Upstream 100 bases:
>100_bases TAGCCTATATCACGCAACTTTTCCTGAATAAGGGGTCTTACACCGGGGCGCTGCAATATTGACTTCATTACCTAAAATCT TCGTCGCCTGGAGTAACGCT
Downstream 100 bases:
>100_bases TAGCGACCATGTTCCGCGCTCACGGTTGAATCTCAACTATCGTGCGACGCCCTTTTAGCTATCGTGCGACGCTCTGCGTC GCATGCCGTTCTGGACGCTC
Product: mannuronan C-5-epimerase
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>1610_residues MIFNTKDFGALGDGVTNDTAAIQATIDAAAAAGGGEVVLAAGTYIVSGGEEPSDGCLMLKSNVTLSGAGMGETIIKLADG SDTKVTGIVRSAYGEETHDFGMNNLTLDGNRDATTGKVDGWFNGYIPGSDGKDSNVTLDSVEIKDCSGYGFDPHEQTVNM VIKNSVSHGNGLDGFVADYLSDSVFENNVAYNNDRHGFNVVTSTHDFTLSNNIAYGNGSTGIVVQRGSENIPSPANITIT GGAVYGNGAEGVLIKLSSQVSVSGLDIHDNGSAGVRIYGSSAVDVFDNTLSNNSLGAPVPEIIIQSYDDTTGVSGKYFNG SDNLIRGNLITGSDNSTYGVAERNEDGTDRNSIVGNTISHTSKGLTLVYGDGSFAGDAFPLVTVLGTEANDVITGGAAHE LIFGLAGKDTLNGGTGDDILVGGAGADKLNGGAGADTFRFDQLTDSYRTATTSATDLLTDFNVSQDRIDLANLGFTGLGS GKNGTLNISYNATLDRTYVKSLDVDASGNRFELGLTGNLKDTLNASHFIFQRVTEGTAGGDTLTGTAGNDVINGNAGVDR IDGGAGADTINGGADADTLTGGAGADVFVYSSRLDSYRNYTAGGPKQSDTIVDFNVAEDRIDLSAIGLRGPGDGSANTLY LSLNGDGSKTYVKTNAVDTTGNRFEIALEGNLLDKLGASNFIFSSASATNQAPVLNTPLMDQIVTELKPFSYAVQPGSFS DPDSTALTYSATLADNSALPDWLKFDSKTLTFSGTPGGTASGLYSVLLTASDATGASVADSFAINVGNVAPGIITGTESA EALYGTEGNDTLLGLGGDDTLRGDTGADVLNGGAGRDALYGGADTDTFVYSTLTDSYRDYDASGLTATDTIFDFTPGQDK IDVSALGFLGLGNGENHTLYMTLNEAGDKTYVKSATSDVEGNRFEIALSGNLINTLTDADFVFGQRESQEILYLPTLGQS NARLLRMTEDDNQSGTSEMAKDLTRYTDYDVRSQFNDANGDAIDLAVGGSTVVGYSTGTPEEQRISWWLTDTDQPGQALL RATELLKAQLASLTAIDKVTTGIIWGQGEEAAQEIARATDKQAAADLYKASTLKVFDYLHAQIGDFTVYLAETGHYQAQA AEARGYPQEKINAIVEGAGYVRAAQEAIASERSDIKLAVDYTDLPLRYEVNSLVYPDDVWHLHEESAEIVGQRLADFIAD DLGFRGNASDNNDPAAIFAGGQNEGGNIFGTSDDDTLIGSAGNDILDGDQGADQMTGGDGNDIYVVDNSLDTVTESNDSP SQVDTVVSSVSWTLGANVENLLLTGVSAIDGTGNALKNVITGNSSDNVVDGGAGGDLLKGGDGSDSYYVDDVADRVVETN SDAWVGGVDTVYSALASYTLGAHLENIAITRTDTANATGNALDNVLYAGAGDNVMGGRDGNDTASYLFASAGVTVALNTS AQQATGGSGLDTLKGTENLTGSQFADSLTGNKNANVLNGGAGNDTLSGGAGDDVLIGSSGADTLIGGTGADRYVFNSIDE VGRDGLRDIINGFKVSEGDKLDFTGFDARPLTDTHDAFTFIGNSAFSANNTGELRFADGVLYGNVDDNTGADFEIQLTGV QSLQAADVIV
Sequences:
NA
Specific function: NA
COG id: COG2931
COG function: function code Q; RTX toxins and related Ca2+-binding proteins
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA