| Definition | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. |
|---|---|
| Accession | NC_004578 |
| Length | 6,397,126 |
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The map label for this gene is lolC
Identifier: 28869312
GI number:
Start: 2284109
End: 2285359
Strand: Direct
Name: lolC
Synonym: PSPTO_2109
Alternate gene names: NA
Gene position: NA
Preceding gene: 28869310
Following gene: 28869313
Centisome position: NA
GC content: NA
Gene sequence:
>1251_bases ATGTTCAGACCTCTATTTGTATTCATCGGCACGCGCTACACCCGTGCGAAGCGACGCAATCATTTTGTTTCCTTCATTTC CCTGACGTCCATGATCGGCCTCGCCCTCGGCGTTGTGGTGATGATAGTCGTGTTATCGGTCATGAACGGTTTCGATCACG AGATGCGTACCCGCGTGCTGGGCATGGTGCCCCACGCGACCATCGAATCCGCTGACCCCATTACCGACTGGCGTGGCCTG GCCGCAAAGGTTCAGGAAAACCCGCAGGTGCTGGCGGTTGCGCCGTTCACGCAAATGCAGGGTTTGCTGACCCATGACGG CAAGGTGCAGAAGGTGCTGCTCAACGGCATCAACCCGGCCGAAGAGCGCAAGGTGTCGATCATCGACCACTTCATCCAGC AGGGTCAGCTCGACAGCCTGTCTGCGGGCAGCTTCGGCATCATGATCGGCGACAAGGCGGCGGCCAAACTGGGTGTCGTG GTGGGCGACAAGCTGACCTTTGTCGCGCCCGAAGTCACGGTTACGCCTGCCGGCATGTTCCCGCGCATGAAACGTTTTGA AGTGACCGGCATTTTTCACGTCGGCGCTGGCGAGATCGACGGGTTTCTGGGGTTGACCAATCTTGACGACCTGGCCCGCC TGCATCGCTGGAAACCCGATCAGGTGCAGGGCCTGCGCTTGAAGTTCGATGACCTGTTCGCTGCGCCGCGCACTTCGTGG GAAATCGCGCAGAAGCTGGGCGAAAACAATTTCTATTCCCGTGACTGGACGCGTACCCACGGCAACCTCTATCAGGCCAT CCGCATGGAAAAAGCCATGATCGGCCTGTTGTTGCTGCTGATTGTTGCCGTCGCGGCGTTCAACATCATTTCCACGCTGG TGATGGTGGTCAACGACAAGAAAGGCGATATCGCCATTCTGCGCACGCTGGGTGCTACACCACGGCAGATCATGGCGATT TTCATGGTGCAGGGCACGGTGATCGGCGTGGTCGGCACGCTGATCGGTGCGGCGCTGGGCATTCTGGCGGCGCTCAATGT CAGTGCGGCCATCTCGATGCTCGAAGGGCTGATCGGCCACAAGTTTCTCAATGCCGATGTCTATTTCATTGATTACCTGC CTTCGCAACTGATGGCCCAGGACGTGTTCCAGGTCTGCGGTGCGGCGTTGGTCCTGAGTTTCCTCGCCACCCTGTATCCG GCCTGGCGTGCTGCGCGCACCCAGCCGGCGGAGGCGTTACGTTATGAGTGA
Upstream 100 bases:
>100_bases CGAACCCAAGCTAGCGGCGGTGGTCAGAGAGTTTCGAGTGTAAAGCTGCACGGCAAGGCCCGCCACATGGACGTCCTCAT TCCTGCGAACAAAATCCTAC
Downstream 100 bases:
>100_bases GTCGGGCATGTCTGATAAAGCAGTATTGAGTTGCCGCAATCTGGGTAAGTCCTACGAGGAAGGCCCGGAGTCTGTGGTGG TGTTGTCCGGCCTGCAACTG
Product: lipoprotein releasing system transmembrane protein LolC
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>416_residues MFRPLFVFIGTRYTRAKRRNHFVSFISLTSMIGLALGVVVMIVVLSVMNGFDHEMRTRVLGMVPHATIESADPITDWRGL AAKVQENPQVLAVAPFTQMQGLLTHDGKVQKVLLNGINPAEERKVSIIDHFIQQGQLDSLSAGSFGIMIGDKAAAKLGVV VGDKLTFVAPEVTVTPAGMFPRMKRFEVTGIFHVGAGEIDGFLGLTNLDDLARLHRWKPDQVQGLRLKFDDLFAAPRTSW EIAQKLGENNFYSRDWTRTHGNLYQAIRMEKAMIGLLLLLIVAVAAFNIISTLVMVVNDKKGDIAILRTLGATPRQIMAI FMVQGTVIGVVGTLIGAALGILAALNVSAAISMLEGLIGHKFLNADVYFIDYLPSQLMAQDVFQVCGAALVLSFLATLYP AWRAARTQPAEALRYE
Sequences:
NA
Specific function: NA
COG id: COG4591
COG function: function code M; ABC-type transport system, involved in lipoprotein release, permease component
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA