Click here to switch to the map view.

The map label for this gene is ylbL [H]

Identifier: 28572790

GI number: 28572790

Start: 736186

End: 737220

Strand: Reverse

Name: ylbL [H]

Synonym: TW645

Alternate gene names: 28572790

Gene position: 737220-736186 (Counterclockwise)

Preceding gene: 28572791

Following gene: 28572789

Centisome position: 79.62

GC content: 45.22

Gene sequence:

>1035_bases
ATGCATTGCGGTTTACGTTCTAAGCGCTTCAGAATTGGATTGTTGTTTTTATTTTTGAGCTGCACCCTCGCTGGGCTTTT
AGGGCTGGCTCCAAGCGGTATGTTAATAGAGCAACCAGGACCCATTCTGCCACTGGTCGGCTTTGGTGATAAAGATGTTG
TAAAGAACAAAAATCTAAAAACAAAAACAGGTAAGCTAATCGGTCTCTCCGTGTTATTGGTTGGCACTCCTGAGGCACGG
CTGCCCGTTGCTTATGTGGCACTTAGCATGTTTGATAGACACCTGAATATAGTTCCATTAGATGAGGTATATCCCCCCGG
AACAAGCGCAGAACATTTTGGGCAGGTACAGGGATATCTGATGCACACTTCTCGTGATACAGCTGTTCTGACTGCTATGC
AGAGACTTGGAATTCCCGTTCTAAAGAGAGTTGTTATTCGCCGAGTTTGGAAAGGTATGGCGTCTGAAGGCAAGTTATTT
ATGGGAGACGAGATTCTATCAGTTGATAACAAGCCAGTTCCGTCGCTTGAAGTGCTAAGGGGTGCCATTCAGAATAGACC
TCTCAAGCTCGAGATCCTGCGTTCCGGACGTGTTGTGCTCATCGAGCTTATTCCAAGGGTTGACGGAGATAGGGCACTTC
TCGGGATTGATGTTTTTGAGAAGCCTGTTTCTAAAACTAGTATTGAGTTTGTAGATGGTGATGTTGGTGGACAAAGTGCT
GGATTGATGTTTGCCATTGCTTCGTATGAATTACTCTCAGGTCAAGGAATAACTGATGGTTTGTACATTTCCGGTACAGG
CGCTTTGCATCCTGATGGGCGCGTGTTAGAAATAGCCGGTTCTGTGCAAAAAATGTGGGCAGCTTACCGTGCAGGTTCTC
GGATTATGCTTTTGCCAAGAGAAAATTGTCCAGAGATCCGCTCTGTGGCACCGCACGATATGTTTGCTTATTCTGTTAGT
AGTTTTGACGAGGCCATCAGTACTATAAAAAATTTGAAGGTCGGTAAAAAGGAATTGAAGAATCGCTGCGCGTAA

Upstream 100 bases:

>100_bases
TCCGTGCATAAAAAGGGGTATTGGTTGTATTTTTTCATATGCTTGAGTATCCGTATATATGTGCATCCCACGAAATAATG
AGATTGGCTTTGAGGTACTG

Downstream 100 bases:

>100_bases
CTTGCGCATGCGGTATACAGCATACGAGGTGATATGAACATTAAACTGCGTTTCCCGCGCTCGAGTCTCGCAATAGCGAT
TCTGTCGGTGGTTGCTTTTC

Product: secreted protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MHCGLRSKRFRIGLLFLFLSCTLAGLLGLAPSGMLIEQPGPILPLVGFGDKDVVKNKNLKTKTGKLIGLSVLLVGTPEAR
LPVAYVALSMFDRHLNIVPLDEVYPPGTSAEHFGQVQGYLMHTSRDTAVLTAMQRLGIPVLKRVVIRRVWKGMASEGKLF
MGDEILSVDNKPVPSLEVLRGAIQNRPLKLEILRSGRVVLIELIPRVDGDRALLGIDVFEKPVSKTSIEFVDGDVGGQSA
GLMFAIASYELLSGQGITDGLYISGTGALHPDGRVLEIAGSVQKMWAAYRAGSRIMLLPRENCPEIRSVAPHDMFAYSVS
SFDEAISTIKNLKVGKKELKNRCA

Sequences:

>Translated_344_residues
MHCGLRSKRFRIGLLFLFLSCTLAGLLGLAPSGMLIEQPGPILPLVGFGDKDVVKNKNLKTKTGKLIGLSVLLVGTPEAR
LPVAYVALSMFDRHLNIVPLDEVYPPGTSAEHFGQVQGYLMHTSRDTAVLTAMQRLGIPVLKRVVIRRVWKGMASEGKLF
MGDEILSVDNKPVPSLEVLRGAIQNRPLKLEILRSGRVVLIELIPRVDGDRALLGIDVFEKPVSKTSIEFVDGDVGGQSA
GLMFAIASYELLSGQGITDGLYISGTGALHPDGRVLEIAGSVQKMWAAYRAGSRIMLLPRENCPEIRSVAPHDMFAYSVS
SFDEAISTIKNLKVGKKELKNRCA
>Mature_344_residues
MHCGLRSKRFRIGLLFLFLSCTLAGLLGLAPSGMLIEQPGPILPLVGFGDKDVVKNKNLKTKTGKLIGLSVLLVGTPEAR
LPVAYVALSMFDRHLNIVPLDEVYPPGTSAEHFGQVQGYLMHTSRDTAVLTAMQRLGIPVLKRVVIRRVWKGMASEGKLF
MGDEILSVDNKPVPSLEVLRGAIQNRPLKLEILRSGRVVLIELIPRVDGDRALLGIDVFEKPVSKTSIEFVDGDVGGQSA
GLMFAIASYELLSGQGITDGLYISGTGALHPDGRVLEIAGSVQKMWAAYRAGSRIMLLPRENCPEIRSVAPHDMFAYSVS
SFDEAISTIKNLKVGKKELKNRCA

Specific function: Unknown

COG id: COG3480

COG function: function code T; Predicted secreted protein containing a PDZ domain

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF00595 PDZ [H]

EC number: NA

Molecular weight: Translated: 37401; Mature: 37401

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHCGLRSKRFRIGLLFLFLSCTLAGLLGLAPSGMLIEQPGPILPLVGFGDKDVVKNKNLK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHCCCCCC
TKTGKLIGLSVLLVGTPEARLPVAYVALSMFDRHLNIVPLDEVYPPGTSAEHFGQVQGYL
CCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEECHHCCCCCCCHHHHHHHCEEE
MHTSRDTAVLTAMQRLGIPVLKRVVIRRVWKGMASEGKLFMGDEILSVDNKPVPSLEVLR
EECCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEECCEEEECCCCCCCHHHHHH
GAIQNRPLKLEILRSGRVVLIELIPRVDGDRALLGIDVFEKPVSKTSIEFVDGDVGGQSA
HHHHCCCEEEEEECCCCEEEEEEECCCCCCCEEEEHHHHHCCCCCCEEEEEECCCCCCCC
GLMFAIASYELLSGQGITDGLYISGTGALHPDGRVLEIAGSVQKMWAAYRAGSRIMLLPR
CEEEEEEHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEEEC
ENCPEIRSVAPHDMFAYSVSSFDEAISTIKNLKVGKKELKNRCA
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure
MHCGLRSKRFRIGLLFLFLSCTLAGLLGLAPSGMLIEQPGPILPLVGFGDKDVVKNKNLK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHCCCCCC
TKTGKLIGLSVLLVGTPEARLPVAYVALSMFDRHLNIVPLDEVYPPGTSAEHFGQVQGYL
CCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEECHHCCCCCCCHHHHHHHCEEE
MHTSRDTAVLTAMQRLGIPVLKRVVIRRVWKGMASEGKLFMGDEILSVDNKPVPSLEVLR
EECCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEECCEEEECCCCCCCHHHHHH
GAIQNRPLKLEILRSGRVVLIELIPRVDGDRALLGIDVFEKPVSKTSIEFVDGDVGGQSA
HHHHCCCEEEEEECCCCEEEEEEECCCCCCCEEEEHHHHHCCCCCCEEEEEECCCCCCCC
GLMFAIASYELLSGQGITDGLYISGTGALHPDGRVLEIAGSVQKMWAAYRAGSRIMLLPR
CEEEEEEHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEEEC
ENCPEIRSVAPHDMFAYSVSSFDEAISTIKNLKVGKKELKNRCA
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]