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The map label for this gene is dedA [C]

Identifier: 28572783

GI number: 28572783

Start: 725920

End: 726630

Strand: Direct

Name: dedA [C]

Synonym: TW638

Alternate gene names: 28572783

Gene position: 725920-726630 (Clockwise)

Preceding gene: 28572781

Following gene: 28572786

Centisome position: 78.4

GC content: 47.26

Gene sequence:

>711_bases
ATGGTAGCATTCGAATGGTTTTATCCACGGTCAATCATTGGGGTGTTTTTGCGGAGCGTGCAAGTCGGGTTTCTGTTACC
ACTCGGTTGGTTTGATGTAGAGAGTTTGGCCAATACTTTTGGGCCATGGACTCTTCTTGTTGCGTGCGGGATGATCTTTG
CCGAAACTGGGCTTCTTATAGGTTTCTTTTTACCTGGGGATACTTTACTAATCACAATTGGTCTGCTGACAAGCGCAGGG
TCCATCGGGGTTCCGATTTGGCTGACATGTTGCCTGGTCTCGGCAGCAGCATATATTGGAGGGGATGTTGGGTATTTTAT
AGGCCGCCTGGCAGGTCCAAAGTTATTCGAGAAGGACAGCAGATCCTTTGCGAAGAAAAGCGCTGAACGAACCAGCGAGT
TTTTCAGAAAATACGGTGTACTGACTGTTACGATCGCGCGCTTCTTTCCGATTATTCGCACATTTGCCCCAGTTGCAGCG
GGTATATCAAAAATGCGGTACTCGGTTTACAGCATTTGCAACCTGCTCGGAGCAGTTATCTGGGGTACCGGTGTAACCCT
GCTCGGGTTCTTCCTGGCAGGAATACCTATTGTTCGAGACAATATTGAAATAGTAATCCTGCTAGCTGTCGGTCTCGTTA
TACTGTCAGCTGTATTACATTATGTCACGCGTGGCAAGAAGAATAAGTCCTCTTCAAAAGAGAGGACATAA

Upstream 100 bases:

>100_bases
AGAAGGCTTGGTTGCCCGAGAAGGAGCCTGGGTAGAGGATGAATGTTTACCAGATGGCTGTGCAGAATGATGGATAGTCA
CAGGCGCGGATGGCGGTAGC

Downstream 100 bases:

>100_bases
GCCGAAGCGCCTTGTACCTGTGACTTATCCTGTTCTTTAAGTCAGACCCAAGGCCTGCGGCAGAGACACTGTATCCGTCC
GGCAGAAAAACAGGATCGTA

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MVAFEWFYPRSIIGVFLRSVQVGFLLPLGWFDVESLANTFGPWTLLVACGMIFAETGLLIGFFLPGDTLLITIGLLTSAG
SIGVPIWLTCCLVSAAAYIGGDVGYFIGRLAGPKLFEKDSRSFAKKSAERTSEFFRKYGVLTVTIARFFPIIRTFAPVAA
GISKMRYSVYSICNLLGAVIWGTGVTLLGFFLAGIPIVRDNIEIVILLAVGLVILSAVLHYVTRGKKNKSSSKERT

Sequences:

>Translated_236_residues
MVAFEWFYPRSIIGVFLRSVQVGFLLPLGWFDVESLANTFGPWTLLVACGMIFAETGLLIGFFLPGDTLLITIGLLTSAG
SIGVPIWLTCCLVSAAAYIGGDVGYFIGRLAGPKLFEKDSRSFAKKSAERTSEFFRKYGVLTVTIARFFPIIRTFAPVAA
GISKMRYSVYSICNLLGAVIWGTGVTLLGFFLAGIPIVRDNIEIVILLAVGLVILSAVLHYVTRGKKNKSSSKERT
>Mature_236_residues
MVAFEWFYPRSIIGVFLRSVQVGFLLPLGWFDVESLANTFGPWTLLVACGMIFAETGLLIGFFLPGDTLLITIGLLTSAG
SIGVPIWLTCCLVSAAAYIGGDVGYFIGRLAGPKLFEKDSRSFAKKSAERTSEFFRKYGVLTVTIARFFPIIRTFAPVAA
GISKMRYSVYSICNLLGAVIWGTGVTLLGFFLAGIPIVRDNIEIVILLAVGLVILSAVLHYVTRGKKNKSSSKERT

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=183, Percent_Identity=38.2513661202186, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1789481, Length=168, Percent_Identity=31.547619047619, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1789384, Length=157, Percent_Identity=33.1210191082803, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25681; Mature: 25681

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAFEWFYPRSIIGVFLRSVQVGFLLPLGWFDVESLANTFGPWTLLVACGMIFAETGLLI
CCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE
GFFLPGDTLLITIGLLTSAGSIGVPIWLTCCLVSAAAYIGGDVGYFIGRLAGPKLFEKDS
EEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHH
RSFAKKSAERTSEFFRKYGVLTVTIARFFPIIRTFAPVAAGISKMRYSVYSICNLLGAVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGTGVTLLGFFLAGIPIVRDNIEIVILLAVGLVILSAVLHYVTRGKKNKSSSKERT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MVAFEWFYPRSIIGVFLRSVQVGFLLPLGWFDVESLANTFGPWTLLVACGMIFAETGLLI
CCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE
GFFLPGDTLLITIGLLTSAGSIGVPIWLTCCLVSAAAYIGGDVGYFIGRLAGPKLFEKDS
EEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHH
RSFAKKSAERTSEFFRKYGVLTVTIARFFPIIRTFAPVAAGISKMRYSVYSICNLLGAVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGTGVTLLGFFLAGIPIVRDNIEIVILLAVGLVILSAVLHYVTRGKKNKSSSKERT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]