| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572748
Identifier: 28572748
GI number: 28572748
Start: 676009
End: 676287
Strand: Direct
Name: 28572748
Synonym: TW600
Alternate gene names: NA
Gene position: 676009-676287 (Clockwise)
Preceding gene: 28572747
Following gene: 28572766
Centisome position: 73.01
GC content: 45.52
Gene sequence:
>279_bases GTGGCATTTGTCTTGACGCACTGCCAGGCGGTCGTAAACCCTGATGTTATCCCAGACCACAGCCCAGTAAACCACGTCCC AATTTTTTTCCAGAAACCAGAAGATTCGCTAGAACTACTAGAACTACTAGAACTACTAGAACTACTAGAACTACTAGAAC TACTAGAACTACTAGAACAGGAGTCTTCAGATTTGCCCTTTGCAGCGGCGCTAGCAAAAGATCCCACTGCACTGACATCG AATGAATGGGTACCAAATGAATGGACAGCAGGCGAATAA
Upstream 100 bases:
>100_bases AGCGAAGCACTGAAAGAAATAAAAGAACTACAAAAGAATATCTATAAGCACCGCAGTCGGAACCGTTATTACAGTTATTG CAAAGAGGTAAGGGTGTGAG
Downstream 100 bases:
>100_bases GCTTGGGTTTGAGGTGAAGACGCAAGAAAGAAGGTTGGTGAAAGAACAAAGAGCGTGATCAGCTTACCCCTCATCTCACA CCCCACATGTCAAAACAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 92; Mature: 91
Protein sequence:
>92_residues MAFVLTHCQAVVNPDVIPDHSPVNHVPIFFQKPEDSLELLELLELLELLELLELLELLEQESSDLPFAAALAKDPTALTS NEWVPNEWTAGE
Sequences:
>Translated_92_residues MAFVLTHCQAVVNPDVIPDHSPVNHVPIFFQKPEDSLELLELLELLELLELLELLELLEQESSDLPFAAALAKDPTALTS NEWVPNEWTAGE >Mature_91_residues AFVLTHCQAVVNPDVIPDHSPVNHVPIFFQKPEDSLELLELLELLELLELLELLELLEQESSDLPFAAALAKDPTALTSN EWVPNEWTAGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10289; Mature: 10158
Theoretical pI: Translated: 3.68; Mature: 3.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFVLTHCQAVVNPDVIPDHSPVNHVPIFFQKPEDSLELLELLELLELLELLELLELLEQ CCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC ESSDLPFAAALAKDPTALTSNEWVPNEWTAGE CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AFVLTHCQAVVNPDVIPDHSPVNHVPIFFQKPEDSLELLELLELLELLELLELLELLEQ CHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC ESSDLPFAAALAKDPTALTSNEWVPNEWTAGE CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA