Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572743

Identifier: 28572743

GI number: 28572743

Start: 672632

End: 673525

Strand: Reverse

Name: 28572743

Synonym: TW595

Alternate gene names: NA

Gene position: 673525-672632 (Counterclockwise)

Preceding gene: 28572744

Following gene: 28572742

Centisome position: 72.74

GC content: 44.18

Gene sequence:

>894_bases
ATGAGCGGGGCTCTTCGTAAATTTCTGTGCAGGATCAGGTTACGCTCTGTCTTGCTCTCGTTGTCCGTTGTTTTTTTAGG
TTTTCTGCTTTTGTGGATCAACATACCCCCGCCTACCCCTAAATATGCAATTTCCGACCGGGTGTTTCGCGATATTACAA
AACTCATTGCCTCAGATGGCCTTGCCACACTTCCCGAACTGGGTGACGAAAATACCCTTGATTCTCGTGTACATGCCACT
TATCTAATTGCCGTCATGACAGAAGAGGGTAGAAAAAAAGAATTAGGGCGCCTATTGTCTGTCAAGGCACTTCGGGCATA
CGCAACAGATAATAATAAACCGGATCAGTATCGCCTTGAAGCCTATTATGCGATGCAGGTGATCGACGATTCAGAAAATG
GTATTGCTTTTGCGCGAAGCGTTATGGCGCGTCAACCACGCACAATAGAAACACTCAGCCAATTGCATCAATACCTGTCA
GTGGCTGCGGCGGCTATTAGGCTTGATCCAAGTATTTATCGACCCGCATTGCGCCTAAGGAATATGCAGATCGATAATGG
CGAGCTTTTGGCCATTGTCATGAAATATGTTCCCCTAGGATATATGTTTTCTAATTTTCGTGGCAAAGATTCTGTTTTGT
TTCCAGCCCTTCGCAGTGAACTAACCAAATGGACTGATTCGCCATCTGTAGCAAAATTTCTGGTTGGGATGATTTCTCTC
AGCGGAACGCCGTACTCTGTGTCATACAACACAAAAACTGAAATTGCTAAAGGATTTATCGGCTGCCGAACATCAAACGT
TATGATATCAACAACAGGAGAAAAAAGCGCCGACTGCAGTTTGACCAATACGTATTACTTTTTCTATATGAATGGATTTG
GGTACGGTATATGA

Upstream 100 bases:

>100_bases
TATCCTCATACCACTTGTAATTATCCTAGGTGGACTGCCCCAAAGCATTAGGCTCATGCGCACACCCCTTGATAATTTAT
TGAGAAATTGACACATTTGC

Downstream 100 bases:

>100_bases
ATGGATTTGGGCATGAATAGCACGACACTTTTGGAATGCAAAGGGGTCTACAAATCTTATGGCCGAGGATCGTTTACGCT
GACAGATGCCAGTTTTCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSGALRKFLCRIRLRSVLLSLSVVFLGFLLLWINIPPPTPKYAISDRVFRDITKLIASDGLATLPELGDENTLDSRVHAT
YLIAVMTEEGRKKELGRLLSVKALRAYATDNNKPDQYRLEAYYAMQVIDDSENGIAFARSVMARQPRTIETLSQLHQYLS
VAAAAIRLDPSIYRPALRLRNMQIDNGELLAIVMKYVPLGYMFSNFRGKDSVLFPALRSELTKWTDSPSVAKFLVGMISL
SGTPYSVSYNTKTEIAKGFIGCRTSNVMISTTGEKSADCSLTNTYYFFYMNGFGYGI

Sequences:

>Translated_297_residues
MSGALRKFLCRIRLRSVLLSLSVVFLGFLLLWINIPPPTPKYAISDRVFRDITKLIASDGLATLPELGDENTLDSRVHAT
YLIAVMTEEGRKKELGRLLSVKALRAYATDNNKPDQYRLEAYYAMQVIDDSENGIAFARSVMARQPRTIETLSQLHQYLS
VAAAAIRLDPSIYRPALRLRNMQIDNGELLAIVMKYVPLGYMFSNFRGKDSVLFPALRSELTKWTDSPSVAKFLVGMISL
SGTPYSVSYNTKTEIAKGFIGCRTSNVMISTTGEKSADCSLTNTYYFFYMNGFGYGI
>Mature_296_residues
SGALRKFLCRIRLRSVLLSLSVVFLGFLLLWINIPPPTPKYAISDRVFRDITKLIASDGLATLPELGDENTLDSRVHATY
LIAVMTEEGRKKELGRLLSVKALRAYATDNNKPDQYRLEAYYAMQVIDDSENGIAFARSVMARQPRTIETLSQLHQYLSV
AAAAIRLDPSIYRPALRLRNMQIDNGELLAIVMKYVPLGYMFSNFRGKDSVLFPALRSELTKWTDSPSVAKFLVGMISLS
GTPYSVSYNTKTEIAKGFIGCRTSNVMISTTGEKSADCSLTNTYYFFYMNGFGYGI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33273; Mature: 33142

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGALRKFLCRIRLRSVLLSLSVVFLGFLLLWINIPPPTPKYAISDRVFRDITKLIASDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
LATLPELGDENTLDSRVHATYLIAVMTEEGRKKELGRLLSVKALRAYATDNNKPDQYRLE
CCCCCCCCCCCCHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHH
AYYAMQVIDDSENGIAFARSVMARQPRTIETLSQLHQYLSVAAAAIRLDPSIYRPALRLR
EEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NMQIDNGELLAIVMKYVPLGYMFSNFRGKDSVLFPALRSELTKWTDSPSVAKFLVGMISL
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHC
SGTPYSVSYNTKTEIAKGFIGCRTSNVMISTTGEKSADCSLTNTYYFFYMNGFGYGI
CCCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCC
>Mature Secondary Structure 
SGALRKFLCRIRLRSVLLSLSVVFLGFLLLWINIPPPTPKYAISDRVFRDITKLIASDG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
LATLPELGDENTLDSRVHATYLIAVMTEEGRKKELGRLLSVKALRAYATDNNKPDQYRLE
CCCCCCCCCCCCHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHH
AYYAMQVIDDSENGIAFARSVMARQPRTIETLSQLHQYLSVAAAAIRLDPSIYRPALRLR
EEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NMQIDNGELLAIVMKYVPLGYMFSNFRGKDSVLFPALRSELTKWTDSPSVAKFLVGMISL
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHC
SGTPYSVSYNTKTEIAKGFIGCRTSNVMISTTGEKSADCSLTNTYYFFYMNGFGYGI
CCCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA