Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572735

Identifier: 28572735

GI number: 28572735

Start: 659799

End: 660323

Strand: Reverse

Name: 28572735

Synonym: TW587

Alternate gene names: NA

Gene position: 660323-659799 (Counterclockwise)

Preceding gene: 28572737

Following gene: 28572731

Centisome position: 71.31

GC content: 53.14

Gene sequence:

>525_bases
ATGAAAGGAGGATTCTTGAAAAGGAATTTAGAGAAAAAGTACCGGGGGGGGGTATCCTCAACCAGCATTGCGTACCCTGC
CTTAGGTCTTCTTCCTGCACCTGCTCTTTCTGTTAGCGGGGGTTGTGCTGTGAGGAAAAATATCCTAACCGCGCCCCTTA
TTCTCTTATTAACCCTGTTTCTTGTATCTTCCGTCCAACAGTCTGTTTGGGCGGCTCCGGTTGCCCGCGTTGCCGCGAAA
CCTGCAGCTACTAAACCTGCTGCCGCCAAGCCCGCTGCCGCGGCTGCTAGCAGTGACTCCTGCAGTGCTGGTTCTTCCGG
TTCTGAATCCAGTGCTGGTTCTTCCGGAGGTTTCTGGAGTAAAGTCAAGTCTCTCTTCACGAGCCTGTGGACTAAGGTAA
AAACAGCTGCCAGTGGCATTGCTTCGGCTGCAAAATGCGGTCCATGGGGCTTTGCTGCAAGTGTGGTTGTAGCAACCCTG
TCCCTGGTGGGCTATATCGTTGCGGCCGTAAAAGGTTGGCTTTAG

Upstream 100 bases:

>100_bases
CATGTCTTTGTCACAGCTTCCTCAAGAAAAAAGAATTATTGAGAAAAAAGAATTATTGAAGATTCTTATGGAGAGAGCTC
TTGAAGTGAAAGAGGGGTTC

Downstream 100 bases:

>100_bases
GGCGTTTTCTGCGCCGCTGTTCGCTAAGTAACATCCGCTTGACTCGCCTCTTGACTCACCTTGGCTTTATGCGATTGCGT
TTATACAATTGCAATTGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKGGFLKRNLEKKYRGGVSSTSIAYPALGLLPAPALSVSGGCAVRKNILTAPLILLLTLFLVSSVQQSVWAAPVARVAAK
PAATKPAAAKPAAAAASSDSCSAGSSGSESSAGSSGGFWSKVKSLFTSLWTKVKTAASGIASAAKCGPWGFAASVVVATL
SLVGYIVAAVKGWL

Sequences:

>Translated_174_residues
MKGGFLKRNLEKKYRGGVSSTSIAYPALGLLPAPALSVSGGCAVRKNILTAPLILLLTLFLVSSVQQSVWAAPVARVAAK
PAATKPAAAKPAAAAASSDSCSAGSSGSESSAGSSGGFWSKVKSLFTSLWTKVKTAASGIASAAKCGPWGFAASVVVATL
SLVGYIVAAVKGWL
>Mature_174_residues
MKGGFLKRNLEKKYRGGVSSTSIAYPALGLLPAPALSVSGGCAVRKNILTAPLILLLTLFLVSSVQQSVWAAPVARVAAK
PAATKPAAAKPAAAAASSDSCSAGSSGSESSAGSSGGFWSKVKSLFTSLWTKVKTAASGIASAAKCGPWGFAASVVVATL
SLVGYIVAAVKGWL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17343; Mature: 17343

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGGFLKRNLEKKYRGGVSSTSIAYPALGLLPAPALSVSGGCAVRKNILTAPLILLLTLF
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVSSVQQSVWAAPVARVAAKPAATKPAAAKPAAAAASSDSCSAGSSGSESSAGSSGGFWS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
KVKSLFTSLWTKVKTAASGIASAAKCGPWGFAASVVVATLSLVGYIVAAVKGWL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKGGFLKRNLEKKYRGGVSSTSIAYPALGLLPAPALSVSGGCAVRKNILTAPLILLLTLF
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVSSVQQSVWAAPVARVAAKPAATKPAAAKPAAAAASSDSCSAGSSGSESSAGSSGGFWS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
KVKSLFTSLWTKVKTAASGIASAAKCGPWGFAASVVVATLSLVGYIVAAVKGWL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA