| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572725
Identifier: 28572725
GI number: 28572725
Start: 644368
End: 644865
Strand: Reverse
Name: 28572725
Synonym: TW577
Alternate gene names: NA
Gene position: 644865-644368 (Counterclockwise)
Preceding gene: 28572726
Following gene: 28572724
Centisome position: 69.64
GC content: 42.77
Gene sequence:
>498_bases GTGAAAATCAATAATGTAATAAGAAATATTAATGTAATAAGAAGTAACAAGGTCCCACCGAAGTGGATAAAAAGCAGCGA TGGCAGCATTATGCCGATGGTTATTCTATTCACTGTATTGTCTATAGCCTTTATAATCACCGTAACGAATGCTTCGTCAT TGTATCTTGAGAAAAAGCGTATTTTGTCTGTTGCTGATGGCGGTAGCTTGGCAGCTGCAGAAGGGTTTGACCTCTCGCAG CTTTCCTATAACAATGGCTCTCTAAAACAGGTCTTGTCTAATGATAAAGTCGGGGAAATTTTGCAAGAATACGCTAGCCG GGTGGCCAGAAAAGAAAGACTGGATGATCTTCGTATTGAGTCATTTTACTCGGACGGTTCAGGTGTTGGTGTTACACTTT CGGCGCATTGGACTCCTCCGCTTCTTTCTGCACTCTTTCCAAATAGCATGCGTATCAGTGCTTCAAGTTACGCTCGTGGC CGCTTCTTTGACGAGTAG
Upstream 100 bases:
>100_bases ACATCCAGATACACCGAAGTTATATTGCAAACACAAAAGTTACGCATTCGTATGCGACACGCAAGGGCGCTTTATCGCCA ATTTCAACACGGAGGGTGAA
Downstream 100 bases:
>100_bases TTCAGAAATGTTCATGCTTGTGGTGTCAGAATAAGTTCCGCCAAACTGCAAACTGATACCGGACAAGATCGAATTTTTCA GGCGATATTTGATGCACGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 165; Mature: 165
Protein sequence:
>165_residues MKINNVIRNINVIRSNKVPPKWIKSSDGSIMPMVILFTVLSIAFIITVTNASSLYLEKKRILSVADGGSLAAAEGFDLSQ LSYNNGSLKQVLSNDKVGEILQEYASRVARKERLDDLRIESFYSDGSGVGVTLSAHWTPPLLSALFPNSMRISASSYARG RFFDE
Sequences:
>Translated_165_residues MKINNVIRNINVIRSNKVPPKWIKSSDGSIMPMVILFTVLSIAFIITVTNASSLYLEKKRILSVADGGSLAAAEGFDLSQ LSYNNGSLKQVLSNDKVGEILQEYASRVARKERLDDLRIESFYSDGSGVGVTLSAHWTPPLLSALFPNSMRISASSYARG RFFDE >Mature_165_residues MKINNVIRNINVIRSNKVPPKWIKSSDGSIMPMVILFTVLSIAFIITVTNASSLYLEKKRILSVADGGSLAAAEGFDLSQ LSYNNGSLKQVLSNDKVGEILQEYASRVARKERLDDLRIESFYSDGSGVGVTLSAHWTPPLLSALFPNSMRISASSYARG RFFDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18176; Mature: 18176
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKINNVIRNINVIRSNKVPPKWIKSSDGSIMPMVILFTVLSIAFIITVTNASSLYLEKKR CCHHHHHHHHHHEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ILSVADGGSLAAAEGFDLSQLSYNNGSLKQVLSNDKVGEILQEYASRVARKERLDDLRIE HEEECCCCCEEECCCCCCHHEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH SFYSDGSGVGVTLSAHWTPPLLSALFPNSMRISASSYARGRFFDE HHHCCCCCCEEEEECCCCHHHHHHHCCCCEEEECCCCCCCCCCCC >Mature Secondary Structure MKINNVIRNINVIRSNKVPPKWIKSSDGSIMPMVILFTVLSIAFIITVTNASSLYLEKKR CCHHHHHHHHHHEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ILSVADGGSLAAAEGFDLSQLSYNNGSLKQVLSNDKVGEILQEYASRVARKERLDDLRIE HEEECCCCCEEECCCCCCHHEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH SFYSDGSGVGVTLSAHWTPPLLSALFPNSMRISASSYARGRFFDE HHHCCCCCCEEEEECCCCHHHHHHHCCCCEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA