Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572725

Identifier: 28572725

GI number: 28572725

Start: 644368

End: 644865

Strand: Reverse

Name: 28572725

Synonym: TW577

Alternate gene names: NA

Gene position: 644865-644368 (Counterclockwise)

Preceding gene: 28572726

Following gene: 28572724

Centisome position: 69.64

GC content: 42.77

Gene sequence:

>498_bases
GTGAAAATCAATAATGTAATAAGAAATATTAATGTAATAAGAAGTAACAAGGTCCCACCGAAGTGGATAAAAAGCAGCGA
TGGCAGCATTATGCCGATGGTTATTCTATTCACTGTATTGTCTATAGCCTTTATAATCACCGTAACGAATGCTTCGTCAT
TGTATCTTGAGAAAAAGCGTATTTTGTCTGTTGCTGATGGCGGTAGCTTGGCAGCTGCAGAAGGGTTTGACCTCTCGCAG
CTTTCCTATAACAATGGCTCTCTAAAACAGGTCTTGTCTAATGATAAAGTCGGGGAAATTTTGCAAGAATACGCTAGCCG
GGTGGCCAGAAAAGAAAGACTGGATGATCTTCGTATTGAGTCATTTTACTCGGACGGTTCAGGTGTTGGTGTTACACTTT
CGGCGCATTGGACTCCTCCGCTTCTTTCTGCACTCTTTCCAAATAGCATGCGTATCAGTGCTTCAAGTTACGCTCGTGGC
CGCTTCTTTGACGAGTAG

Upstream 100 bases:

>100_bases
ACATCCAGATACACCGAAGTTATATTGCAAACACAAAAGTTACGCATTCGTATGCGACACGCAAGGGCGCTTTATCGCCA
ATTTCAACACGGAGGGTGAA

Downstream 100 bases:

>100_bases
TTCAGAAATGTTCATGCTTGTGGTGTCAGAATAAGTTCCGCCAAACTGCAAACTGATACCGGACAAGATCGAATTTTTCA
GGCGATATTTGATGCACGAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKINNVIRNINVIRSNKVPPKWIKSSDGSIMPMVILFTVLSIAFIITVTNASSLYLEKKRILSVADGGSLAAAEGFDLSQ
LSYNNGSLKQVLSNDKVGEILQEYASRVARKERLDDLRIESFYSDGSGVGVTLSAHWTPPLLSALFPNSMRISASSYARG
RFFDE

Sequences:

>Translated_165_residues
MKINNVIRNINVIRSNKVPPKWIKSSDGSIMPMVILFTVLSIAFIITVTNASSLYLEKKRILSVADGGSLAAAEGFDLSQ
LSYNNGSLKQVLSNDKVGEILQEYASRVARKERLDDLRIESFYSDGSGVGVTLSAHWTPPLLSALFPNSMRISASSYARG
RFFDE
>Mature_165_residues
MKINNVIRNINVIRSNKVPPKWIKSSDGSIMPMVILFTVLSIAFIITVTNASSLYLEKKRILSVADGGSLAAAEGFDLSQ
LSYNNGSLKQVLSNDKVGEILQEYASRVARKERLDDLRIESFYSDGSGVGVTLSAHWTPPLLSALFPNSMRISASSYARG
RFFDE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18176; Mature: 18176

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINNVIRNINVIRSNKVPPKWIKSSDGSIMPMVILFTVLSIAFIITVTNASSLYLEKKR
CCHHHHHHHHHHEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ILSVADGGSLAAAEGFDLSQLSYNNGSLKQVLSNDKVGEILQEYASRVARKERLDDLRIE
HEEECCCCCEEECCCCCCHHEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SFYSDGSGVGVTLSAHWTPPLLSALFPNSMRISASSYARGRFFDE
HHHCCCCCCEEEEECCCCHHHHHHHCCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure
MKINNVIRNINVIRSNKVPPKWIKSSDGSIMPMVILFTVLSIAFIITVTNASSLYLEKKR
CCHHHHHHHHHHEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ILSVADGGSLAAAEGFDLSQLSYNNGSLKQVLSNDKVGEILQEYASRVARKERLDDLRIE
HEEECCCCCEEECCCCCCHHEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SFYSDGSGVGVTLSAHWTPPLLSALFPNSMRISASSYARGRFFDE
HHHCCCCCCEEEEECCCCHHHHHHHCCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA