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The map label for this gene is bioY [H]

Identifier: 28572708

GI number: 28572708

Start: 598196

End: 598759

Strand: Reverse

Name: bioY [H]

Synonym: TW560

Alternate gene names: 28572708

Gene position: 598759-598196 (Counterclockwise)

Preceding gene: 28572709

Following gene: 28572707

Centisome position: 64.67

GC content: 49.82

Gene sequence:

>564_bases
ATGAGTAAGCAAAATGTGCATGATCCGATTTTGAACTCCGTGCTAATTGCCCTGTTTGCTGCCTTTGTTGCTGCCCTTGG
GCTTGTTCCAAAAATAGATCTTCCGGGTGGCGTTCCTATAACGGCTCAAACACTCGGGGTTATGATCGCCGGTGCCGTCC
TGGGTCCGGTTCGTGGCTTTCTTGCCCTGTTGGTGTTTTATGTTCTTCTCGCAGTTGGTATGCCATTCTTACCTGGGGGA
AGGGGTGGCATTGCACCTCTTGTTGGAATAGCCGGTGGGTATATTTTGGGATGGGTTTTTGGCGCCTTCGTTGTTGGGCT
CCTTGTCCAGTTTGCTTTCAGGGCGCAATCCAGGGCTCTTGTTTATGCTGGTGTTTTTGCGAGCTGCCTTGCGGGTGGTG
TTGTTATTGTTTATCTCTTTGGGATCCCGTGGCAGTATGCCGTTGCTGGTGTGCCCATTGATAAGGCTCTTATTGGCTCT
TTGGCCTTTATACCCGGCGATATAATAAAGGCGCTGATCGCCTCCTTTGTCGCTATTTCTTTGCGTAAGTATTACAGGTT
CTAG

Upstream 100 bases:

>100_bases
CGGCTGATTCTGGTTCAGTTGTTCTTGGTTCGAGTCCAGGTACCCCAGCTTTTGCTTTGGCCTGGCAAGTGTGCTACCCT
TAGACGACAAGGAGGGTTGT

Downstream 100 bases:

>100_bases
TCTCCGAGTCGGCACTGGCCCTGTTTTTGGGGCCCTCGCTTACAGTTTGCCCTACGGGATAGGTGAAGAAATAGTGTTTA
GCCTTTCCCAGGCCGTGTGT

Product: BioY-family membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSKQNVHDPILNSVLIALFAAFVAALGLVPKIDLPGGVPITAQTLGVMIAGAVLGPVRGFLALLVFYVLLAVGMPFLPGG
RGGIAPLVGIAGGYILGWVFGAFVVGLLVQFAFRAQSRALVYAGVFASCLAGGVVIVYLFGIPWQYAVAGVPIDKALIGS
LAFIPGDIIKALIASFVAISLRKYYRF

Sequences:

>Translated_187_residues
MSKQNVHDPILNSVLIALFAAFVAALGLVPKIDLPGGVPITAQTLGVMIAGAVLGPVRGFLALLVFYVLLAVGMPFLPGG
RGGIAPLVGIAGGYILGWVFGAFVVGLLVQFAFRAQSRALVYAGVFASCLAGGVVIVYLFGIPWQYAVAGVPIDKALIGS
LAFIPGDIIKALIASFVAISLRKYYRF
>Mature_186_residues
SKQNVHDPILNSVLIALFAAFVAALGLVPKIDLPGGVPITAQTLGVMIAGAVLGPVRGFLALLVFYVLLAVGMPFLPGGR
GGIAPLVGIAGGYILGWVFGAFVVGLLVQFAFRAQSRALVYAGVFASCLAGGVVIVYLFGIPWQYAVAGVPIDKALIGSL
AFIPGDIIKALIASFVAISLRKYYRF

Specific function: Probable biotin transporter [H]

COG id: COG1268

COG function: function code R; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BioY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003784 [H]

Pfam domain/function: PF02632 BioY [H]

EC number: NA

Molecular weight: Translated: 19421; Mature: 19290

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQNVHDPILNSVLIALFAAFVAALGLVPKIDLPGGVPITAQTLGVMIAGAVLGPVRGF
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LALLVFYVLLAVGMPFLPGGRGGIAPLVGIAGGYILGWVFGAFVVGLLVQFAFRAQSRAL
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
VYAGVFASCLAGGVVIVYLFGIPWQYAVAGVPIDKALIGSLAFIPGDIIKALIASFVAIS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LRKYYRF
HHHHHCC
>Mature Secondary Structure 
SKQNVHDPILNSVLIALFAAFVAALGLVPKIDLPGGVPITAQTLGVMIAGAVLGPVRGF
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LALLVFYVLLAVGMPFLPGGRGGIAPLVGIAGGYILGWVFGAFVVGLLVQFAFRAQSRAL
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
VYAGVFASCLAGGVVIVYLFGIPWQYAVAGVPIDKALIGSLAFIPGDIIKALIASFVAIS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LRKYYRF
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]