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The map label for this gene is qcrC [H]

Identifier: 28572672

GI number: 28572672

Start: 562998

End: 563822

Strand: Reverse

Name: qcrC [H]

Synonym: TW523

Alternate gene names: 28572672

Gene position: 563822-562998 (Counterclockwise)

Preceding gene: 28572673

Following gene: 28572671

Centisome position: 60.89

GC content: 50.18

Gene sequence:

>825_bases
ATGATCCGGTCTTTATGTAATCTTTTGCGTGGAAATGCGTCGTTCTTCGTACGCAGAAAGCTGCGTGATGGCCTGTTGAG
GATTGGCCTTATTGCCGCTTGTCTTGTTGTAACCGGTGGTACGTATTCTGCCCTTCTTCAGTCTACAGCGTTTGCCGAGC
AGGCACCTGCCTCGGAGAGTCAGATTGCTCAGGGGCATAAGCTTTTTATTGCTAATTGTGCAACATGCCATGGATTGAAT
GGTGAGGGAACGCAGTACGCGCCCAGTCTGGTTGGTGCTGGTGCTGCATCAGCTGATTTTCAGCTTTCTTCTGGGCGCAT
GCCGCTTAGGATGAATGGGCCTCAGGCGCTTTATAAGCCTCCTCAGTATACGAAGGATGAAATAGCGGCTATTGTTGCAT
ATGTTGCCTCCTTGGGTCCTGGGCCCGCCATTCCAGAGGAAAAGTATTTAACTCCGAATGGGGATCTTGTCTTGGGTGCA
GAGCTCTTTAAGGTGAACTGTGCTGCCTGTCATAATGTTGCTGGCGCAGGAGGTGCCCTGACAGAGGGGAAGTTTGCACC
GCGGATTATAAATATGCCGCCTGTGCGCATATACGAGGCAATGCTGACAGGGCCACAATCCATGCCGATTTTTAATGACG
CGTCTATAACGCCCGAACAAAAGAGGGATATAATCACATATTTGCATTATTTATCTACGCAACCCTCACCCGGGGGCTTT
GGGCTTGGTTCACTTGGGCCGGTCGCAGAAGGTCTGTTTGCTTGGGTTTTTCTCGTTGGAGGTATAACTGCTTTTGCGGT
TTGGATTGCCGCTAGATCTGATTAG

Upstream 100 bases:

>100_bases
CTCATGACGCCGTGGCAGCGATCGCCGTATCGTACTACTGGCACTTTGTTGACATTGTGTGGGTTTTTTTGTTTTCGTCA
ATTTATATTCTCGGTGTGTG

Downstream 100 bases:

>100_bases
GATGGGTTAAGTATGCCGAAGGATGTACAACGCGGGTTAAGTCTGGCAGAAAATTGACCGTGTCAGAGTTTAAAGACCCA
GGCCTGCCTCCACATAGACA

Product: cytochrome C heme-binding subunit

Products: NA

Alternate protein names: Cytochrome bc1 complex cytochrome c subunit [H]

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MIRSLCNLLRGNASFFVRRKLRDGLLRIGLIAACLVVTGGTYSALLQSTAFAEQAPASESQIAQGHKLFIANCATCHGLN
GEGTQYAPSLVGAGAASADFQLSSGRMPLRMNGPQALYKPPQYTKDEIAAIVAYVASLGPGPAIPEEKYLTPNGDLVLGA
ELFKVNCAACHNVAGAGGALTEGKFAPRIINMPPVRIYEAMLTGPQSMPIFNDASITPEQKRDIITYLHYLSTQPSPGGF
GLGSLGPVAEGLFAWVFLVGGITAFAVWIAARSD

Sequences:

>Translated_274_residues
MIRSLCNLLRGNASFFVRRKLRDGLLRIGLIAACLVVTGGTYSALLQSTAFAEQAPASESQIAQGHKLFIANCATCHGLN
GEGTQYAPSLVGAGAASADFQLSSGRMPLRMNGPQALYKPPQYTKDEIAAIVAYVASLGPGPAIPEEKYLTPNGDLVLGA
ELFKVNCAACHNVAGAGGALTEGKFAPRIINMPPVRIYEAMLTGPQSMPIFNDASITPEQKRDIITYLHYLSTQPSPGGF
GLGSLGPVAEGLFAWVFLVGGITAFAVWIAARSD
>Mature_274_residues
MIRSLCNLLRGNASFFVRRKLRDGLLRIGLIAACLVVTGGTYSALLQSTAFAEQAPASESQIAQGHKLFIANCATCHGLN
GEGTQYAPSLVGAGAASADFQLSSGRMPLRMNGPQALYKPPQYTKDEIAAIVAYVASLGPGPAIPEEKYLTPNGDLVLGA
ELFKVNCAACHNVAGAGGALTEGKFAPRIINMPPVRIYEAMLTGPQSMPIFNDASITPEQKRDIITYLHYLSTQPSPGGF
GLGSLGPVAEGLFAWVFLVGGITAFAVWIAARSD

Specific function: Component of the menaquinol-cytochrome c reductase complex [H]

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 cytochrome c domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR009152 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 28831; Mature: 28831

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSLCNLLRGNASFFVRRKLRDGLLRIGLIAACLVVTGGTYSALLQSTAFAEQAPASES
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
QIAQGHKLFIANCATCHGLNGEGTQYAPSLVGAGAASADFQLSSGRMPLRMNGPQALYKP
HHHCCCEEEEEECCEECCCCCCCCCCCHHHHCCCCCCCCEEECCCCCEEEECCCHHHCCC
PQYTKDEIAAIVAYVASLGPGPAIPEEKYLTPNGDLVLGAELFKVNCAACHNVAGAGGAL
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEECHHHHHHHHHHHHCCCCCCCCC
TEGKFAPRIINMPPVRIYEAMLTGPQSMPIFNDASITPEQKRDIITYLHYLSTQPSPGGF
CCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
GLGSLGPVAEGLFAWVFLVGGITAFAVWIAARSD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIRSLCNLLRGNASFFVRRKLRDGLLRIGLIAACLVVTGGTYSALLQSTAFAEQAPASES
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
QIAQGHKLFIANCATCHGLNGEGTQYAPSLVGAGAASADFQLSSGRMPLRMNGPQALYKP
HHHCCCEEEEEECCEECCCCCCCCCCCHHHHCCCCCCCCEEECCCCCEEEECCCHHHCCC
PQYTKDEIAAIVAYVASLGPGPAIPEEKYLTPNGDLVLGAELFKVNCAACHNVAGAGGAL
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEECHHHHHHHHHHHHCCCCCCCCC
TEGKFAPRIINMPPVRIYEAMLTGPQSMPIFNDASITPEQKRDIITYLHYLSTQPSPGGF
CCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
GLGSLGPVAEGLFAWVFLVGGITAFAVWIAARSD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12840036 [H]