| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is aceE [H]
Identifier: 28572664
GI number: 28572664
Start: 553337
End: 556156
Strand: Direct
Name: aceE [H]
Synonym: TW515
Alternate gene names: 28572664
Gene position: 553337-556156 (Clockwise)
Preceding gene: 28572660
Following gene: 28572665
Centisome position: 59.76
GC content: 46.52
Gene sequence:
>2820_bases ATGCCACCTGCAAGAAGCGGATTTGAGCCAACAAGCGATCGTGAGGCGTTTGACGCTGAAACGCAGGAGTGGCTTGATTC CCTTGATGCCTTGATCCATGCCTCGGGAAATGAGCGAGCCGGGGAGATTCTCTCCAAACTGTTAGAAGTTGCAAAAGAAA AGGGTGTCCCGCGCAATTGCGACTTATGGGGACCCACAAAACCAGGCACCGGGATTTTACCTAGCAAAACACATGAACCT AGCAAACATGATACGAGTAATGTGTCAAACAAAGACGAGTCGGCTTGCGTCTGGCTACCAAGGGGTCTTGTAACTGACTA TGTAAATACAATCACGGGGAAGTCGAATTTCCCTGGAGACGAGCGATTAGAAACGGAATTTCTCGGATTTGTGAGGTGGA ATGCTGCAGTCATGGTTCACAGGGCACAAGAGTCTGGGGTCGGTGGTCACATTTCAACATACGCCTCTTCTGCACTGCTC TACGAGGTTGGGTTTAATCACTTTTTCAAGGGCCCGAGTCATCCTTCGGGTGCTGACCAAGTTTTTTTTCAGGGACACGC CTCACCTGGAATATACGCTCGTTCTTTTCTGGAAGGAAGGCTATCGGAGTCTGATCTAGATGGATTTCGTCAAGAAAAAA GCAGATCCGGGGTGCCCTCTTACCCGCATCCAAGGTGCATGCAAAGTTACTGGCAATTTCCGACAGTCAGCATGGGCCTT GGTGCCATAAATGCGATTTATCAGGCTCAAACAAATAAGTATCTAACGCAGCATGGCATAAAGGACTGCTCACAACAAAA AGTATGGGCCTTTTTGGGTGATGGAGAAATGGACGAACCAGAAAGTCGCGGACAATTACAGGTTGCTTCAAATGATGGAC TGGACAACCTGATCTTTGTCATAAATTGCAACTTACAGCGACTCGACGGGCCTGTTAGGGGTAACGGAAAGATAATTCAG GAGCTTGAGGCTTTTTTCAAAGGGGCCGGATGGAAAACAATAAAAGTCGTATGGGGAACAGAGTGGGATGACCTGTTTGA ACAGGATACAGGAGAGCTCATAGAGCTTCTAAACGAGGTTCGTGATGGGGATTTTCAAACATACAAGGCAAACGGCGGGT CGTACATGAGAACTCATCTATTTGGTAAAAATCCAAAGTGCCTATCCCTTGTTGGAAATTACACAGATAATCAGCTTGAT CAACTCTCTCTCGGTGGTCATGACTTTCGCAAGATTTATGCGGCGTATTTTGATGCGGTCCATAATACAGACGGCAGACC AACGGTAATCCTTGCACATACGATAAAGGGCTATGGCTTGGGCCAGCACTTCGAGGGGCGCAACGCAACCCATCAAATCA AAACTCTAACCCTTGATGAAATAAAACTTTTCAGAAATGCCCTGGGCATTCCAATAAGCGATAAACAAATTGAAAAAGAC CCAGCCTTACCGCCCTACTATAACCCAGGTCCAACGCACCAGGCCGTAGAGTATGCATTAAAGAAAAGAAATGCTCTGGG AGGACGTTTACCTTTCAGAAGTGGGTGGTTTAGACGTATAGATTTGCCTTCCGAAAGGGTATACGATGTTGCCAAGTCTG GCAGTGAATCTGTTGCCAGCACTGCAGTTGCATCAAGAATAATAAGAGAACTTCTGAAAAGCGGTGAATTTGGGAAAAGG ATTGCGGTTATCATTCCAGACGAAGCAAGGACATTTGGAATGGATGCCTATTTCCCAAGTGCAAAAATCTACAACCCCAT GGGCCAGCACTATACCCCGGTTGATCACAAGTTGTTCCTCAAATACGAAGAAAGTACAACAGGACAGGTAATACATGTCG GGATCAACGAGGCCGGTGCCATGGGGGCTTTTTCTGCGCTTGGAACAAGCTATGCAACCCATGGAGAAATGCTTGTTCCA TTTTATATCTTCTATTCAATGTTTGGATTTCAGAGAACGGGAGATGCAATATGGGCTGCTGCTGACCAGATGGCACGTGG ATTTCTATTAGGTGCGGTTGCCGGACGAACAACACTTGCAGGTGAAGGCTTACAGCATGGTGATGGTCATTCCCATCTCT TAGCCTCGACAAATCCGGCAGTTATCGCCTACGATCCGGCATTTGGGTACGAGATAGGCAATATAATCCAGCACGGTCTG GAGATTATGTACAGCGGACAGAGGCGCAATAATTCACACAATAATCAAATTGATCCAGACGTTATTTTTTATCTAACCCT ATACAACGAACCGATACATAATCCACCACAACCCGATGATCTTGATCTTGAGGGTCTTATTCGCGGAATATACAAATACA AGCCAGGCATAGTGCCGGTGGCAAGTGTTTTGGCAAGCGGAATCGCGCTTCCGTGGGCTCTTGAAGCGCAAGAAATTCTG AAAGATAAATGCAATATTGACATTGATGTTTGGTCTGTTACCAGTTGGTCTCAACTTGCCAGAGACGGGTATAAATGTGA AAAGCATAATGTGTTCAATCCAGAAGAGGAGCAGAAAATTCCGTATGTAACGCAGAGACTGCGCACTGCCACCCCTCTGT ATATTGGGGTTAGCGATTATATGCGTGCTGTGCCCGAACAAATAAGGCCATTTGTTCCTGGAGACTACACAACCCTCGGG ACTGATGGCTTTGGCTTTTCTGATACTCGGTCGGCTGCGAGGCGTTTTTTTCAAGTCGACACGAGCAGTATCGTAATAGC CGTTTTGTCACGGTTGGCAAAAAACGGTCTTGTTGACAAAGACATGCTTAAGCGTGAACTGATCCAATACAGAAGCAACA GGCATGGCATCCATCTGTGA
Upstream 100 bases:
>100_bases GACACGATCCCTCCCAAAATCCACGCCAGAGAAGCCCGGAATGCAGACTCCGCCTGCGGTGCACAACAATTATACCCTGG TAGAGTTTTAGCGAGACACT
Downstream 100 bases:
>100_bases TACCATCCCTGAAGAGTGTGCAGCCGCAGGGAATGCGGTTATCACGTGTCCAGGACAAGGCGCTCAGAAGTCGGGCCTTC TGAACGAGTGGCTGGACCTT
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 939; Mature: 938
Protein sequence:
>939_residues MPPARSGFEPTSDREAFDAETQEWLDSLDALIHASGNERAGEILSKLLEVAKEKGVPRNCDLWGPTKPGTGILPSKTHEP SKHDTSNVSNKDESACVWLPRGLVTDYVNTITGKSNFPGDERLETEFLGFVRWNAAVMVHRAQESGVGGHISTYASSALL YEVGFNHFFKGPSHPSGADQVFFQGHASPGIYARSFLEGRLSESDLDGFRQEKSRSGVPSYPHPRCMQSYWQFPTVSMGL GAINAIYQAQTNKYLTQHGIKDCSQQKVWAFLGDGEMDEPESRGQLQVASNDGLDNLIFVINCNLQRLDGPVRGNGKIIQ ELEAFFKGAGWKTIKVVWGTEWDDLFEQDTGELIELLNEVRDGDFQTYKANGGSYMRTHLFGKNPKCLSLVGNYTDNQLD QLSLGGHDFRKIYAAYFDAVHNTDGRPTVILAHTIKGYGLGQHFEGRNATHQIKTLTLDEIKLFRNALGIPISDKQIEKD PALPPYYNPGPTHQAVEYALKKRNALGGRLPFRSGWFRRIDLPSERVYDVAKSGSESVASTAVASRIIRELLKSGEFGKR IAVIIPDEARTFGMDAYFPSAKIYNPMGQHYTPVDHKLFLKYEESTTGQVIHVGINEAGAMGAFSALGTSYATHGEMLVP FYIFYSMFGFQRTGDAIWAAADQMARGFLLGAVAGRTTLAGEGLQHGDGHSHLLASTNPAVIAYDPAFGYEIGNIIQHGL EIMYSGQRRNNSHNNQIDPDVIFYLTLYNEPIHNPPQPDDLDLEGLIRGIYKYKPGIVPVASVLASGIALPWALEAQEIL KDKCNIDIDVWSVTSWSQLARDGYKCEKHNVFNPEEEQKIPYVTQRLRTATPLYIGVSDYMRAVPEQIRPFVPGDYTTLG TDGFGFSDTRSAARRFFQVDTSSIVIAVLSRLAKNGLVDKDMLKRELIQYRSNRHGIHL
Sequences:
>Translated_939_residues MPPARSGFEPTSDREAFDAETQEWLDSLDALIHASGNERAGEILSKLLEVAKEKGVPRNCDLWGPTKPGTGILPSKTHEP SKHDTSNVSNKDESACVWLPRGLVTDYVNTITGKSNFPGDERLETEFLGFVRWNAAVMVHRAQESGVGGHISTYASSALL YEVGFNHFFKGPSHPSGADQVFFQGHASPGIYARSFLEGRLSESDLDGFRQEKSRSGVPSYPHPRCMQSYWQFPTVSMGL GAINAIYQAQTNKYLTQHGIKDCSQQKVWAFLGDGEMDEPESRGQLQVASNDGLDNLIFVINCNLQRLDGPVRGNGKIIQ ELEAFFKGAGWKTIKVVWGTEWDDLFEQDTGELIELLNEVRDGDFQTYKANGGSYMRTHLFGKNPKCLSLVGNYTDNQLD QLSLGGHDFRKIYAAYFDAVHNTDGRPTVILAHTIKGYGLGQHFEGRNATHQIKTLTLDEIKLFRNALGIPISDKQIEKD PALPPYYNPGPTHQAVEYALKKRNALGGRLPFRSGWFRRIDLPSERVYDVAKSGSESVASTAVASRIIRELLKSGEFGKR IAVIIPDEARTFGMDAYFPSAKIYNPMGQHYTPVDHKLFLKYEESTTGQVIHVGINEAGAMGAFSALGTSYATHGEMLVP FYIFYSMFGFQRTGDAIWAAADQMARGFLLGAVAGRTTLAGEGLQHGDGHSHLLASTNPAVIAYDPAFGYEIGNIIQHGL EIMYSGQRRNNSHNNQIDPDVIFYLTLYNEPIHNPPQPDDLDLEGLIRGIYKYKPGIVPVASVLASGIALPWALEAQEIL KDKCNIDIDVWSVTSWSQLARDGYKCEKHNVFNPEEEQKIPYVTQRLRTATPLYIGVSDYMRAVPEQIRPFVPGDYTTLG TDGFGFSDTRSAARRFFQVDTSSIVIAVLSRLAKNGLVDKDMLKRELIQYRSNRHGIHL >Mature_938_residues PPARSGFEPTSDREAFDAETQEWLDSLDALIHASGNERAGEILSKLLEVAKEKGVPRNCDLWGPTKPGTGILPSKTHEPS KHDTSNVSNKDESACVWLPRGLVTDYVNTITGKSNFPGDERLETEFLGFVRWNAAVMVHRAQESGVGGHISTYASSALLY EVGFNHFFKGPSHPSGADQVFFQGHASPGIYARSFLEGRLSESDLDGFRQEKSRSGVPSYPHPRCMQSYWQFPTVSMGLG AINAIYQAQTNKYLTQHGIKDCSQQKVWAFLGDGEMDEPESRGQLQVASNDGLDNLIFVINCNLQRLDGPVRGNGKIIQE LEAFFKGAGWKTIKVVWGTEWDDLFEQDTGELIELLNEVRDGDFQTYKANGGSYMRTHLFGKNPKCLSLVGNYTDNQLDQ LSLGGHDFRKIYAAYFDAVHNTDGRPTVILAHTIKGYGLGQHFEGRNATHQIKTLTLDEIKLFRNALGIPISDKQIEKDP ALPPYYNPGPTHQAVEYALKKRNALGGRLPFRSGWFRRIDLPSERVYDVAKSGSESVASTAVASRIIRELLKSGEFGKRI AVIIPDEARTFGMDAYFPSAKIYNPMGQHYTPVDHKLFLKYEESTTGQVIHVGINEAGAMGAFSALGTSYATHGEMLVPF YIFYSMFGFQRTGDAIWAAADQMARGFLLGAVAGRTTLAGEGLQHGDGHSHLLASTNPAVIAYDPAFGYEIGNIIQHGLE IMYSGQRRNNSHNNQIDPDVIFYLTLYNEPIHNPPQPDDLDLEGLIRGIYKYKPGIVPVASVLASGIALPWALEAQEILK DKCNIDIDVWSVTSWSQLARDGYKCEKHNVFNPEEEQKIPYVTQRLRTATPLYIGVSDYMRAVPEQIRPFVPGDYTTLGT DGFGFSDTRSAARRFFQVDTSSIVIAVLSRLAKNGLVDKDMLKRELIQYRSNRHGIHL
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI133778974, Length=200, Percent_Identity=32.5, Blast_Score=72, Evalue=3e-12, Organism=Escherichia coli, GI1786304, Length=921, Percent_Identity=45.0597176981542, Blast_Score=784, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 104330; Mature: 104198
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPARSGFEPTSDREAFDAETQEWLDSLDALIHASGNERAGEILSKLLEVAKEKGVPRNC CCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC DLWGPTKPGTGILPSKTHEPSKHDTSNVSNKDESACVWLPRGLVTDYVNTITGKSNFPGD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCCCC ERLETEFLGFVRWNAAVMVHRAQESGVGGHISTYASSALLYEVGFNHFFKGPSHPSGADQ HHHHHHHHHHHEECEEEEEEECHHCCCCCCHHHHHHHHHHEECCHHHHCCCCCCCCCCCC VFFQGHASPGIYARSFLEGRLSESDLDGFRQEKSRSGVPSYPHPRCMQSYWQFPTVSMGL EEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHH GAINAIYQAQTNKYLTQHGIKDCSQQKVWAFLGDGEMDEPESRGQLQVASNDGLDNLIFV HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEE INCNLQRLDGPVRGNGKIIQELEAFFKGAGWKTIKVVWGTEWDDLFEQDTGELIELLNEV EECCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCHHHHHHHHHHH RDGDFQTYKANGGSYMRTHLFGKNPKCLSLVGNYTDNQLDQLSLGGHDFRKIYAAYFDAV CCCCCEEEECCCCCEEEEEECCCCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHH HNTDGRPTVILAHTIKGYGLGQHFEGRNATHQIKTLTLDEIKLFRNALGIPISDKQIEKD HCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCC PALPPYYNPGPTHQAVEYALKKRNALGGRLPFRSGWFRRIDLPSERVYDVAKSGSESVAS CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHH TAVASRIIRELLKSGEFGKRIAVIIPDEARTFGMDAYFPSAKIYNPMGQHYTPVDHKLFL HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEE KYEESTTGQVIHVGINEAGAMGAFSALGTSYATHGEMLVPFYIFYSMFGFQRTGDAIWAA EECCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH ADQMARGFLLGAVAGRTTLAGEGLQHGDGHSHLLASTNPAVIAYDPAFGYEIGNIIQHGL HHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHH EIMYSGQRRNNSHNNQIDPDVIFYLTLYNEPIHNPPQPDDLDLEGLIRGIYKYKPGIVPV HHEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH ASVLASGIALPWALEAQEILKDKCNIDIDVWSVTSWSQLARDGYKCEKHNVFNPEEEQKI HHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCHHCCC PYVTQRLRTATPLYIGVSDYMRAVPEQIRPFVPGDYTTLGTDGFGFSDTRSAARRFFQVD CHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHCC TSSIVIAVLSRLAKNGLVDKDMLKRELIQYRSNRHGIHL CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PPARSGFEPTSDREAFDAETQEWLDSLDALIHASGNERAGEILSKLLEVAKEKGVPRNC CCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC DLWGPTKPGTGILPSKTHEPSKHDTSNVSNKDESACVWLPRGLVTDYVNTITGKSNFPGD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCCCC ERLETEFLGFVRWNAAVMVHRAQESGVGGHISTYASSALLYEVGFNHFFKGPSHPSGADQ HHHHHHHHHHHEECEEEEEEECHHCCCCCCHHHHHHHHHHEECCHHHHCCCCCCCCCCCC VFFQGHASPGIYARSFLEGRLSESDLDGFRQEKSRSGVPSYPHPRCMQSYWQFPTVSMGL EEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHH GAINAIYQAQTNKYLTQHGIKDCSQQKVWAFLGDGEMDEPESRGQLQVASNDGLDNLIFV HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEE INCNLQRLDGPVRGNGKIIQELEAFFKGAGWKTIKVVWGTEWDDLFEQDTGELIELLNEV EECCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCHHHHHHHHHHH RDGDFQTYKANGGSYMRTHLFGKNPKCLSLVGNYTDNQLDQLSLGGHDFRKIYAAYFDAV CCCCCEEEECCCCCEEEEEECCCCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHH HNTDGRPTVILAHTIKGYGLGQHFEGRNATHQIKTLTLDEIKLFRNALGIPISDKQIEKD HCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCC PALPPYYNPGPTHQAVEYALKKRNALGGRLPFRSGWFRRIDLPSERVYDVAKSGSESVAS CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHH TAVASRIIRELLKSGEFGKRIAVIIPDEARTFGMDAYFPSAKIYNPMGQHYTPVDHKLFL HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEE KYEESTTGQVIHVGINEAGAMGAFSALGTSYATHGEMLVPFYIFYSMFGFQRTGDAIWAA EECCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH ADQMARGFLLGAVAGRTTLAGEGLQHGDGHSHLLASTNPAVIAYDPAFGYEIGNIIQHGL HHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHH EIMYSGQRRNNSHNNQIDPDVIFYLTLYNEPIHNPPQPDDLDLEGLIRGIYKYKPGIVPV HHEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH ASVLASGIALPWALEAQEILKDKCNIDIDVWSVTSWSQLARDGYKCEKHNVFNPEEEQKI HHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCHHCCC PYVTQRLRTATPLYIGVSDYMRAVPEQIRPFVPGDYTTLGTDGFGFSDTRSAARRFFQVD CHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHCC TSSIVIAVLSRLAKNGLVDKDMLKRELIQYRSNRHGIHL CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA