| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572595
Identifier: 28572595
GI number: 28572595
Start: 484012
End: 484953
Strand: Direct
Name: 28572595
Synonym: TW444
Alternate gene names: NA
Gene position: 484012-484953 (Clockwise)
Preceding gene: 28572594
Following gene: 28572597
Centisome position: 52.27
GC content: 40.66
Gene sequence:
>942_bases GTGCGCCTGTACCGTCCCCTCTTTTATGCCTGTTTACTTCTGAGCTTTTTATTTTTCATTCTTTCTGACCGGTACGGTAT GGAGAGAACCCAGAGCCCTCACACGGTTGACATAAGTCAGAGGTACTTTGCTGACTCGAGCTTATCTCTGCTCCCACATC TACTAGATCCTGATATCAAACATATTGCTTTAGATGTTGATGGGCATCCCGAACTAAAACTCAGAAAGGGTAATAAAGGA AAACATCCGATTGCAAGTATTAGCAAAGTTATATTGGCCCTTATGCTTATAGAGCGATACTCTCTTTCAGAGCTAAACGA TGGCCCAAATATCACCTACGATACCGAAGATGTCAGTTTTTTTAGAAATTCTGTCAAAGATGGAGATTCGTACGCACCTG TTTATGCAGGCCTTACCCTGACACTAAAACAGTCCCTTATACCGCTTATGTTACCCTCGGCAAATAATTATGCAACCTCT CTTGTAAAGCATCTTTACGGAAAGTCTTATCCAAAATTTGCTAGAGAATGGCTTGATAAGAACGGCCTGTATAACACTGA TATTTATGAGGCAAGTGGATTGGATGACAGAAATGTAAGCACCACCGATAACCTTATCGTGCTTGCGAAAAAAGCTTACT CTAACCCTGTTTTACGCGGGATAATGCGCTTAAAAGAAGCTAGCATTCCAAATATAGGGTTGGTAAGAAATACGAATAAA GCACTGGGTATAAACGGAATTGACGGAATAAAGACAGGTAGCAGTCCGGCAGCAAAATCCAATCTCTTATTTACTGCAGC TATTAAAACAAAAAATGGCTTGATTCGTATTTATGGCGTATTTAAGACAGAGAAAAGCTACGCGTCACTCTACGGAAAAC TGGACACCCTCTTGAAAAGAGTACGCGCGTACTTTCATCAACGTAATTTATTAACTGACTAA
Upstream 100 bases:
>100_bases AAAATTATAACGAAAGAGAATCTTGACACCATTTACAAAAAGTAGGCAGTAAGAATATAGCAGCGGCGGTGTCTATTGCC GCTGCTATATTTGAGGTATC
Downstream 100 bases:
>100_bases ACAGTAATTCAGGAATTACAATGCTCAAGGAATACAGCTGTAACGCACTCTTCTATAACAAAACGCCCGCCAGTTATCCC CGGCGGGCGTTTATAAAAAC
Product: carboxypeptidase
Products: NA
Alternate protein names: Peptidase; Carboxypeptidase; D-Alanyl-D-Alanine Endopeptidase
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MRLYRPLFYACLLLSFLFFILSDRYGMERTQSPHTVDISQRYFADSSLSLLPHLLDPDIKHIALDVDGHPELKLRKGNKG KHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSFFRNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATS LVKHLYGKSYPKFAREWLDKNGLYNTDIYEASGLDDRNVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNK ALGINGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLLKRVRAYFHQRNLLTD
Sequences:
>Translated_313_residues MRLYRPLFYACLLLSFLFFILSDRYGMERTQSPHTVDISQRYFADSSLSLLPHLLDPDIKHIALDVDGHPELKLRKGNKG KHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSFFRNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATS LVKHLYGKSYPKFAREWLDKNGLYNTDIYEASGLDDRNVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNK ALGINGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLLKRVRAYFHQRNLLTD >Mature_313_residues MRLYRPLFYACLLLSFLFFILSDRYGMERTQSPHTVDISQRYFADSSLSLLPHLLDPDIKHIALDVDGHPELKLRKGNKG KHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSFFRNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATS LVKHLYGKSYPKFAREWLDKNGLYNTDIYEASGLDDRNVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNK ALGINGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLLKRVRAYFHQRNLLTD
Specific function: Unknown
COG id: COG1686
COG function: function code M; D-alanyl-D-alanine carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35118; Mature: 35118
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLYRPLFYACLLLSFLFFILSDRYGMERTQSPHTVDISQRYFADSSLSLLPHLLDPDIK CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHCCCHHHHHHHHHCCCCE HIALDVDGHPELKLRKGNKGKHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSF EEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHH FRNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFAREWLDK HHHHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHC NGLYNTDIYEASGLDDRNVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNK CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCCCEEEECCCC ALGINGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLLKR EECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHH VRAYFHQRNLLTD HHHHHHHHHCCCC >Mature Secondary Structure MRLYRPLFYACLLLSFLFFILSDRYGMERTQSPHTVDISQRYFADSSLSLLPHLLDPDIK CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHCCCHHHHHHHHHCCCCE HIALDVDGHPELKLRKGNKGKHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSF EEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHH FRNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFAREWLDK HHHHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHC NGLYNTDIYEASGLDDRNVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNK CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCCCEEEECCCC ALGINGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLLKR EECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHH VRAYFHQRNLLTD HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA