Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572595

Identifier: 28572595

GI number: 28572595

Start: 484012

End: 484953

Strand: Direct

Name: 28572595

Synonym: TW444

Alternate gene names: NA

Gene position: 484012-484953 (Clockwise)

Preceding gene: 28572594

Following gene: 28572597

Centisome position: 52.27

GC content: 40.66

Gene sequence:

>942_bases
GTGCGCCTGTACCGTCCCCTCTTTTATGCCTGTTTACTTCTGAGCTTTTTATTTTTCATTCTTTCTGACCGGTACGGTAT
GGAGAGAACCCAGAGCCCTCACACGGTTGACATAAGTCAGAGGTACTTTGCTGACTCGAGCTTATCTCTGCTCCCACATC
TACTAGATCCTGATATCAAACATATTGCTTTAGATGTTGATGGGCATCCCGAACTAAAACTCAGAAAGGGTAATAAAGGA
AAACATCCGATTGCAAGTATTAGCAAAGTTATATTGGCCCTTATGCTTATAGAGCGATACTCTCTTTCAGAGCTAAACGA
TGGCCCAAATATCACCTACGATACCGAAGATGTCAGTTTTTTTAGAAATTCTGTCAAAGATGGAGATTCGTACGCACCTG
TTTATGCAGGCCTTACCCTGACACTAAAACAGTCCCTTATACCGCTTATGTTACCCTCGGCAAATAATTATGCAACCTCT
CTTGTAAAGCATCTTTACGGAAAGTCTTATCCAAAATTTGCTAGAGAATGGCTTGATAAGAACGGCCTGTATAACACTGA
TATTTATGAGGCAAGTGGATTGGATGACAGAAATGTAAGCACCACCGATAACCTTATCGTGCTTGCGAAAAAAGCTTACT
CTAACCCTGTTTTACGCGGGATAATGCGCTTAAAAGAAGCTAGCATTCCAAATATAGGGTTGGTAAGAAATACGAATAAA
GCACTGGGTATAAACGGAATTGACGGAATAAAGACAGGTAGCAGTCCGGCAGCAAAATCCAATCTCTTATTTACTGCAGC
TATTAAAACAAAAAATGGCTTGATTCGTATTTATGGCGTATTTAAGACAGAGAAAAGCTACGCGTCACTCTACGGAAAAC
TGGACACCCTCTTGAAAAGAGTACGCGCGTACTTTCATCAACGTAATTTATTAACTGACTAA

Upstream 100 bases:

>100_bases
AAAATTATAACGAAAGAGAATCTTGACACCATTTACAAAAAGTAGGCAGTAAGAATATAGCAGCGGCGGTGTCTATTGCC
GCTGCTATATTTGAGGTATC

Downstream 100 bases:

>100_bases
ACAGTAATTCAGGAATTACAATGCTCAAGGAATACAGCTGTAACGCACTCTTCTATAACAAAACGCCCGCCAGTTATCCC
CGGCGGGCGTTTATAAAAAC

Product: carboxypeptidase

Products: NA

Alternate protein names: Peptidase; Carboxypeptidase; D-Alanyl-D-Alanine Endopeptidase

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRLYRPLFYACLLLSFLFFILSDRYGMERTQSPHTVDISQRYFADSSLSLLPHLLDPDIKHIALDVDGHPELKLRKGNKG
KHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSFFRNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATS
LVKHLYGKSYPKFAREWLDKNGLYNTDIYEASGLDDRNVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNK
ALGINGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLLKRVRAYFHQRNLLTD

Sequences:

>Translated_313_residues
MRLYRPLFYACLLLSFLFFILSDRYGMERTQSPHTVDISQRYFADSSLSLLPHLLDPDIKHIALDVDGHPELKLRKGNKG
KHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSFFRNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATS
LVKHLYGKSYPKFAREWLDKNGLYNTDIYEASGLDDRNVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNK
ALGINGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLLKRVRAYFHQRNLLTD
>Mature_313_residues
MRLYRPLFYACLLLSFLFFILSDRYGMERTQSPHTVDISQRYFADSSLSLLPHLLDPDIKHIALDVDGHPELKLRKGNKG
KHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSFFRNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATS
LVKHLYGKSYPKFAREWLDKNGLYNTDIYEASGLDDRNVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNK
ALGINGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLLKRVRAYFHQRNLLTD

Specific function: Unknown

COG id: COG1686

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35118; Mature: 35118

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLYRPLFYACLLLSFLFFILSDRYGMERTQSPHTVDISQRYFADSSLSLLPHLLDPDIK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHCCCHHHHHHHHHCCCCE
HIALDVDGHPELKLRKGNKGKHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSF
EEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHH
FRNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFAREWLDK
HHHHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHC
NGLYNTDIYEASGLDDRNVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNK
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCCCEEEECCCC
ALGINGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLLKR
EECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHH
VRAYFHQRNLLTD
HHHHHHHHHCCCC
>Mature Secondary Structure
MRLYRPLFYACLLLSFLFFILSDRYGMERTQSPHTVDISQRYFADSSLSLLPHLLDPDIK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHCCCHHHHHHHHHCCCCE
HIALDVDGHPELKLRKGNKGKHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSF
EEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHH
FRNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFAREWLDK
HHHHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHC
NGLYNTDIYEASGLDDRNVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNK
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCCCEEEECCCC
ALGINGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLLKR
EECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHH
VRAYFHQRNLLTD
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA