| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572519
Identifier: 28572519
GI number: 28572519
Start: 398438
End: 399064
Strand: Reverse
Name: 28572519
Synonym: TW366
Alternate gene names: NA
Gene position: 399064-398438 (Counterclockwise)
Preceding gene: 28572524
Following gene: 28572516
Centisome position: 43.1
GC content: 45.61
Gene sequence:
>627_bases ATGTCTGCTGGTGTTATAGTTTCTGTTTTTATTGCCAGCTGTATTACCAGATCGTCTGTAAAAAAGCTTCTGAAGAGAGA TGCAATTCTTGCTCGTAAACATGCAGCAGAATGCCTGATAGATACATTTCTAGAATTTCGTAATCAATATTCCCTTGAAG AAAATAAACGAAATTCAGATCAAACATTCGAGAGATGTACCATGCATATTGCCCTTATGCCTCAGTATGGAGCAAAGTTG CTTGTTGATTGGGCCGGGCAAATAGCTGGAGAGGTGCGAAGAGCTACGCTGAACGGAGACACTGATGCAATCACGTACGA GTTTCGGGATCGAGTGGCCCTATGGGTAAAAAATCCTCGTAAGGCTACGAAAGGGATTCGCGAAGACATAAGTCGGTTCC GCTCTGAAAACCCCTCTTACAGGCCCCTTACAGGCAAGGTAAACACGAATGATGAAGAAAATTGGCACCCTCAAGAACCA ATTACAGATTTAGCGGGGGCAGATACAGTGAAGGCGGGTCAGGACAACAACGTGGCCTCAGAGCCCTATAGAATGAGACC CGGATTTGATACTGCGGCGAGGGATATCCTAAGGCAGGTAAAGGACATTCAGGCAGGGGGCAAATAA
Upstream 100 bases:
>100_bases ATTAACGCGATTTTACAGAAATTCGTTATAGCTTTGGTGTATGCCGTGGGAGAGGGTAGCAAGCGTTTTTGACCTGCCCG CGGTACAACAGGCTTTAATC
Downstream 100 bases:
>100_bases ACCTGTGTGGCCCCTCGTGCGCAACTCATAGCATGATCATTTACCAGGAGATTATTTGCGCCACCATGTTGAGTGTGGGG TTATGGGGGGCATTCTTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MSAGVIVSVFIASCITRSSVKKLLKRDAILARKHAAECLIDTFLEFRNQYSLEENKRNSDQTFERCTMHIALMPQYGAKL LVDWAGQIAGEVRRATLNGDTDAITYEFRDRVALWVKNPRKATKGIREDISRFRSENPSYRPLTGKVNTNDEENWHPQEP ITDLAGADTVKAGQDNNVASEPYRMRPGFDTAARDILRQVKDIQAGGK
Sequences:
>Translated_208_residues MSAGVIVSVFIASCITRSSVKKLLKRDAILARKHAAECLIDTFLEFRNQYSLEENKRNSDQTFERCTMHIALMPQYGAKL LVDWAGQIAGEVRRATLNGDTDAITYEFRDRVALWVKNPRKATKGIREDISRFRSENPSYRPLTGKVNTNDEENWHPQEP ITDLAGADTVKAGQDNNVASEPYRMRPGFDTAARDILRQVKDIQAGGK >Mature_207_residues SAGVIVSVFIASCITRSSVKKLLKRDAILARKHAAECLIDTFLEFRNQYSLEENKRNSDQTFERCTMHIALMPQYGAKLL VDWAGQIAGEVRRATLNGDTDAITYEFRDRVALWVKNPRKATKGIREDISRFRSENPSYRPLTGKVNTNDEENWHPQEPI TDLAGADTVKAGQDNNVASEPYRMRPGFDTAARDILRQVKDIQAGGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23459; Mature: 23328
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAGVIVSVFIASCITRSSVKKLLKRDAILARKHAAECLIDTFLEFRNQYSLEENKRNSD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCH QTFERCTMHIALMPQYGAKLLVDWAGQIAGEVRRATLNGDTDAITYEFRDRVALWVKNPR HHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCEEEEECCHH KATKGIREDISRFRSENPSYRPLTGKVNTNDEENWHPQEPITDLAGADTVKAGQDNNVAS HHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC EPYRMRPGFDTAARDILRQVKDIQAGGK CCCCCCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SAGVIVSVFIASCITRSSVKKLLKRDAILARKHAAECLIDTFLEFRNQYSLEENKRNSD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCH QTFERCTMHIALMPQYGAKLLVDWAGQIAGEVRRATLNGDTDAITYEFRDRVALWVKNPR HHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCEEEEECCHH KATKGIREDISRFRSENPSYRPLTGKVNTNDEENWHPQEPITDLAGADTVKAGQDNNVAS HHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC EPYRMRPGFDTAARDILRQVKDIQAGGK CCCCCCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA