| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
Click here to switch to the map view.
The map label for this gene is 28572512
Identifier: 28572512
GI number: 28572512
Start: 392340
End: 393296
Strand: Reverse
Name: 28572512
Synonym: TW358
Alternate gene names: NA
Gene position: 393296-392340 (Counterclockwise)
Preceding gene: 28572516
Following gene: 28572504
Centisome position: 42.48
GC content: 42.63
Gene sequence:
>957_bases GTGATAAAGAAAATATTCCTCATATGTTTTTTTGTCTCATGCAGTGCTTTATTTTTCATAAGTGACACCCTGCCAGAACA AGTGCGATATATCTCTCAAGATTTTCTACCATGGCTTATCGTGCCCATTCTTATTTTCCTTGTACCCTCGCTGATAAGGT TTTCCCTTATCCCCTCCCTGGTTGGCACAATCACGGTCATTTTCTGGGCAACTCAAATCGGAATTAGCGCCCTCCCGTCA GGTGAGAGTCAAGTGCCTGATTTAACCATTGTTACTCAGGATATGAACTCTGAAGCGAGTGTAAGCGAAGCGCAAACTAC ACACCGGTCAAGAAATAACTCACCTCCGGACAATATTAACAGGGATGTAAAAACACTATTAGAAAGCAATCCAGACATCA TCGCATTACAGGGAATAAAGAATGCTGCAATAGGCACCCTGGTCGGGAGCCTTTCCCCAAGCTTTCCATTCTGGCATATT TTTGGAACTGTAGGTATTTGGTCAAAAAAACCACTTGAGAATGCAGTTATGCTCCAGCTTGGCTCCAAGCTAACAAGTGC CGGAAAAATCGACATAAAAATATCTAAGGAACAAACTGTGCGGATGTATGTTGTAAGCCTCCGGAAAAATCAACTAGACA GGTTGGCTCAAGATGAATACGAAGGTATGATAAAAGATTTGTCAGTTTATCTTTCTCAAGAGAATTCAGAAAAACTAATC GTTGTTGGTGGTTTTGGAATGAGTGCAAGAGATTCGAGATTCAAAAAACTCCTGAAAAATAACCTTAAAGACATGCACAC TGCGTCGTGGGGTTTTGATTTCACGTGGCCATCCGTTTTCCCGCTTATAGATTTAGACCACATACTCTCGACAGGTTTTA CGGCGACAGGCGGCAAGCTAATACACCTAGAGGGCAGTGATCACAAGGGGATTCTCATGGGACTCAAGCACACCTGA
Upstream 100 bases:
>100_bases TCAGCACACTGCAAAACAGTGATATCGAAAATAGCACAAGTTAAGATTTAAGGATTCCAACGTAACAAGCCTATTTGCAC GGGCATGAGATTATGAGTAA
Downstream 100 bases:
>100_bases TCACTGTCGAAAACAGCACAAAGTGATACAAGCCTTTACCGCAAGAGCTTACCGTGGAAGGAGTCTATTCAGGATAGTCT GTCGAAGCTTTGAGGCATCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 318; Mature: 318
Protein sequence:
>318_residues MIKKIFLICFFVSCSALFFISDTLPEQVRYISQDFLPWLIVPILIFLVPSLIRFSLIPSLVGTITVIFWATQIGISALPS GESQVPDLTIVTQDMNSEASVSEAQTTHRSRNNSPPDNINRDVKTLLESNPDIIALQGIKNAAIGTLVGSLSPSFPFWHI FGTVGIWSKKPLENAVMLQLGSKLTSAGKIDIKISKEQTVRMYVVSLRKNQLDRLAQDEYEGMIKDLSVYLSQENSEKLI VVGGFGMSARDSRFKKLLKNNLKDMHTASWGFDFTWPSVFPLIDLDHILSTGFTATGGKLIHLEGSDHKGILMGLKHT
Sequences:
>Translated_318_residues MIKKIFLICFFVSCSALFFISDTLPEQVRYISQDFLPWLIVPILIFLVPSLIRFSLIPSLVGTITVIFWATQIGISALPS GESQVPDLTIVTQDMNSEASVSEAQTTHRSRNNSPPDNINRDVKTLLESNPDIIALQGIKNAAIGTLVGSLSPSFPFWHI FGTVGIWSKKPLENAVMLQLGSKLTSAGKIDIKISKEQTVRMYVVSLRKNQLDRLAQDEYEGMIKDLSVYLSQENSEKLI VVGGFGMSARDSRFKKLLKNNLKDMHTASWGFDFTWPSVFPLIDLDHILSTGFTATGGKLIHLEGSDHKGILMGLKHT >Mature_318_residues MIKKIFLICFFVSCSALFFISDTLPEQVRYISQDFLPWLIVPILIFLVPSLIRFSLIPSLVGTITVIFWATQIGISALPS GESQVPDLTIVTQDMNSEASVSEAQTTHRSRNNSPPDNINRDVKTLLESNPDIIALQGIKNAAIGTLVGSLSPSFPFWHI FGTVGIWSKKPLENAVMLQLGSKLTSAGKIDIKISKEQTVRMYVVSLRKNQLDRLAQDEYEGMIKDLSVYLSQENSEKLI VVGGFGMSARDSRFKKLLKNNLKDMHTASWGFDFTWPSVFPLIDLDHILSTGFTATGGKLIHLEGSDHKGILMGLKHT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35313; Mature: 35313
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKKIFLICFFVSCSALFFISDTLPEQVRYISQDFLPWLIVPILIFLVPSLIRFSLIPSL CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGTITVIFWATQIGISALPSGESQVPDLTIVTQDMNSEASVSEAQTTHRSRNNSPPDNIN HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCH RDVKTLLESNPDIIALQGIKNAAIGTLVGSLSPSFPFWHIFGTVGIWSKKPLENAVMLQL HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHH GSKLTSAGKIDIKISKEQTVRMYVVSLRKNQLDRLAQDEYEGMIKDLSVYLSQENSEKLI HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE VVGGFGMSARDSRFKKLLKNNLKDMHTASWGFDFTWPSVFPLIDLDHILSTGFTATGGKL EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEE IHLEGSDHKGILMGLKHT EEEECCCCCCEEEECCCC >Mature Secondary Structure MIKKIFLICFFVSCSALFFISDTLPEQVRYISQDFLPWLIVPILIFLVPSLIRFSLIPSL CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGTITVIFWATQIGISALPSGESQVPDLTIVTQDMNSEASVSEAQTTHRSRNNSPPDNIN HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCH RDVKTLLESNPDIIALQGIKNAAIGTLVGSLSPSFPFWHIFGTVGIWSKKPLENAVMLQL HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHH GSKLTSAGKIDIKISKEQTVRMYVVSLRKNQLDRLAQDEYEGMIKDLSVYLSQENSEKLI HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE VVGGFGMSARDSRFKKLLKNNLKDMHTASWGFDFTWPSVFPLIDLDHILSTGFTATGGKL EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEE IHLEGSDHKGILMGLKHT EEEECCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA