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The map label for this gene is yifB [C]

Identifier: 28572468

GI number: 28572468

Start: 345709

End: 347244

Strand: Direct

Name: yifB [C]

Synonym: TW313

Alternate gene names: 28572468

Gene position: 345709-347244 (Clockwise)

Preceding gene: 28572467

Following gene: 28572469

Centisome position: 37.34

GC content: 49.02

Gene sequence:

>1536_bases
GTGATTGCAAAAACTTACTCCGTTGCACTAAATGGCCTTCAGAGCAGCATGGTTGAACTTGAAGCGGATATAGGTAACGG
CCTTCCAATTTTTACACTTGTTGGCCTTCCGGATGCTGCCCTTCTTGAAGCTCGCGAGCGTATAAGGGCGGCGTGTAAGA
ACTCCGATCTTCCCCTGTCGAATAGGAAAATAACAGTCAACCTCTCACCAGCGTCAATTCCAAAGCACGGCTCCGGCTTT
GATCTGGCAATAGCTATTGCATGCCTATCTGCCATGGGTAAAGTTGACCGCAGTCTCGTGAGTCAAACTGTTCACATAGG
TGAGCTTGGTCTTGACGGTATGCTCCGACCCGTTCCTGGGATTTTGCCAAGTGTGCTCGCGGCAAGAACATATGGATATC
GCCGCGTTATGCTTCCTGTAGAAAACGTTCATGAGGCCAGGTTGGTTCCAGAAATTGAGGCGATACCGGTCCCCTCATTG
GCCCATGCGGCAGTAGCCTACGGTGCTGATGTGACGGTTCCCAAAACTAAGACTGTGCCCGTACAAGCTGTGCTAGATAA
CAGTGAATACGAGGGTGATCTTTCTGATATATCTGGGAATCAACTTGGTATTGAGGCTCTTCAAATTGCCGCAGCCGGTG
GGCACAATCTGTTTTTTTATGGACCAGCGGGTTCCGGGAAAACAATGCTTGCAAGCCGCCTGCCAGCACTTCTCCCAGAT
CTATCTCCACAGGCATCACTCGAGGTAAGTTCTGTTGTATCCCTTTCTGGCACAGGCTTAAAGGATGGGCTTATAACTAG
ACCTCCTTTTGAGGCACCCCACCACAGCATAACGGCATCTGCCCTTGTTGGCGGCGGAGCGAAGCGAATTATTCCCGGTG
CTGTTTCCAGGGCTTCACACGGTGTTCTATTCCTTGATGAGGCTCCAGAGTTTTCACCACGCGTTCTGAATATGTTGCGC
CAGCCGCTTGAGACTGGGCAGATTAGTATTCACAGATCTACAACCACTGCAACTTTTCCGGCCACTTTTCAACTCATCCT
CGCTGCCAATCCATGTCCATGCGGGAATTTTGGGATTAAAGATGCGGAATGTGTATGTTCTTCTTCAGCACGTCGTAAGT
ACATGGGCCGAATACACAGACCAATAATCGACAGGATTGATATTCAGCTGATGATAAACAGGATTAGCATTGCTGAGCTT
CGCTCTGGCTTGTCTGGATCATCGGGTATGACAACTGAAAGCGTGCGGAACACTGTTCTCCTCGCTAGAGAGCGTACCTT
GTACAGAATGAAAGATACGCCGTGGAGCACAAATAGTCAGGCGTCAAGTGACTGGCTGCAGAGGCAGCCAATTCTCCCCG
GTGCCACAGACAGTCTCGACATTGCATTTCAAAGAGGTCTACTTAGTATGCGGGGTTATCACAAAGTTATTCGTCTGGCC
TGGACAATTGCAGATATTACCGGTGTTTCAAAATTAACTAAGAGTGAGATAGACAAGGCTCTTATTTTCAGAACATCTGG
TCAATATGGTGGGTAG

Upstream 100 bases:

>100_bases
ACGAGAATAAATTAAACGAATTTTGCATTGATCTCAGAATAGACGCCGTCTCGGTTACATTTATTCCGGAATTGCAGATC
CGTCATTTTGTTGGAATTTT

Downstream 100 bases:

>100_bases
ACAAGGAAGGCAATTTATTGAAGAACATTATTAGTACGCTTAATCTGCCAGATAGGGAAGTTATATCCGCTGTGAAGCCC
CTATGTTTTTCTGAGGAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 511

Protein sequence:

>511_residues
MIAKTYSVALNGLQSSMVELEADIGNGLPIFTLVGLPDAALLEARERIRAACKNSDLPLSNRKITVNLSPASIPKHGSGF
DLAIAIACLSAMGKVDRSLVSQTVHIGELGLDGMLRPVPGILPSVLAARTYGYRRVMLPVENVHEARLVPEIEAIPVPSL
AHAAVAYGADVTVPKTKTVPVQAVLDNSEYEGDLSDISGNQLGIEALQIAAAGGHNLFFYGPAGSGKTMLASRLPALLPD
LSPQASLEVSSVVSLSGTGLKDGLITRPPFEAPHHSITASALVGGGAKRIIPGAVSRASHGVLFLDEAPEFSPRVLNMLR
QPLETGQISIHRSTTTATFPATFQLILAANPCPCGNFGIKDAECVCSSSARRKYMGRIHRPIIDRIDIQLMINRISIAEL
RSGLSGSSGMTTESVRNTVLLARERTLYRMKDTPWSTNSQASSDWLQRQPILPGATDSLDIAFQRGLLSMRGYHKVIRLA
WTIADITGVSKLTKSEIDKALIFRTSGQYGG

Sequences:

>Translated_511_residues
MIAKTYSVALNGLQSSMVELEADIGNGLPIFTLVGLPDAALLEARERIRAACKNSDLPLSNRKITVNLSPASIPKHGSGF
DLAIAIACLSAMGKVDRSLVSQTVHIGELGLDGMLRPVPGILPSVLAARTYGYRRVMLPVENVHEARLVPEIEAIPVPSL
AHAAVAYGADVTVPKTKTVPVQAVLDNSEYEGDLSDISGNQLGIEALQIAAAGGHNLFFYGPAGSGKTMLASRLPALLPD
LSPQASLEVSSVVSLSGTGLKDGLITRPPFEAPHHSITASALVGGGAKRIIPGAVSRASHGVLFLDEAPEFSPRVLNMLR
QPLETGQISIHRSTTTATFPATFQLILAANPCPCGNFGIKDAECVCSSSARRKYMGRIHRPIIDRIDIQLMINRISIAEL
RSGLSGSSGMTTESVRNTVLLARERTLYRMKDTPWSTNSQASSDWLQRQPILPGATDSLDIAFQRGLLSMRGYHKVIRLA
WTIADITGVSKLTKSEIDKALIFRTSGQYGG
>Mature_511_residues
MIAKTYSVALNGLQSSMVELEADIGNGLPIFTLVGLPDAALLEARERIRAACKNSDLPLSNRKITVNLSPASIPKHGSGF
DLAIAIACLSAMGKVDRSLVSQTVHIGELGLDGMLRPVPGILPSVLAARTYGYRRVMLPVENVHEARLVPEIEAIPVPSL
AHAAVAYGADVTVPKTKTVPVQAVLDNSEYEGDLSDISGNQLGIEALQIAAAGGHNLFFYGPAGSGKTMLASRLPALLPD
LSPQASLEVSSVVSLSGTGLKDGLITRPPFEAPHHSITASALVGGGAKRIIPGAVSRASHGVLFLDEAPEFSPRVLNMLR
QPLETGQISIHRSTTTATFPATFQLILAANPCPCGNFGIKDAECVCSSSARRKYMGRIHRPIIDRIDIQLMINRISIAEL
RSGLSGSSGMTTESVRNTVLLARERTLYRMKDTPWSTNSQASSDWLQRQPILPGATDSLDIAFQRGLLSMRGYHKVIRLA
WTIADITGVSKLTKSEIDKALIFRTSGQYGG

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=502, Percent_Identity=36.2549800796813, Blast_Score=278, Evalue=8e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 54508; Mature: 54508

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKTYSVALNGLQSSMVELEADIGNGLPIFTLVGLPDAALLEARERIRAACKNSDLPLS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
NRKITVNLSPASIPKHGSGFDLAIAIACLSAMGKVDRSLVSQTVHIGELGLDGMLRPVPG
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
ILPSVLAARTYGYRRVMLPVENVHEARLVPEIEAIPVPSLAHAAVAYGADVTVPKTKTVP
HHHHHHHHHHCCCEEEEEEHHCCHHHHCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCE
VQAVLDNSEYEGDLSDISGNQLGIEALQIAAAGGHNLFFYGPAGSGKTMLASRLPALLPD
EEEEECCCCCCCCHHHCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCC
LSPQASLEVSSVVSLSGTGLKDGLITRPPFEAPHHSITASALVGGGAKRIIPGAVSRASH
CCCCCCEEHHHEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCCHHCCCHHHHHCCC
GVLFLDEAPEFSPRVLNMLRQPLETGQISIHRSTTTATFPATFQLILAANPCPCGNFGIK
CEEEEECCCCCCHHHHHHHHCCHHCCCEEEEECCCCEECCCEEEEEEECCCCCCCCCCCC
DAECVCSSSARRKYMGRIHRPIIDRIDIQLMINRISIAELRSGLSGSSGMTTESVRNTVL
CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEEE
LARERTLYRMKDTPWSTNSQASSDWLQRQPILPGATDSLDIAFQRGLLSMRGYHKVIRLA
EEECCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WTIADITGVSKLTKSEIDKALIFRTSGQYGG
HHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
>Mature Secondary Structure
MIAKTYSVALNGLQSSMVELEADIGNGLPIFTLVGLPDAALLEARERIRAACKNSDLPLS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
NRKITVNLSPASIPKHGSGFDLAIAIACLSAMGKVDRSLVSQTVHIGELGLDGMLRPVPG
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
ILPSVLAARTYGYRRVMLPVENVHEARLVPEIEAIPVPSLAHAAVAYGADVTVPKTKTVP
HHHHHHHHHHCCCEEEEEEHHCCHHHHCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCE
VQAVLDNSEYEGDLSDISGNQLGIEALQIAAAGGHNLFFYGPAGSGKTMLASRLPALLPD
EEEEECCCCCCCCHHHCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCC
LSPQASLEVSSVVSLSGTGLKDGLITRPPFEAPHHSITASALVGGGAKRIIPGAVSRASH
CCCCCCEEHHHEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCCHHCCCHHHHHCCC
GVLFLDEAPEFSPRVLNMLRQPLETGQISIHRSTTTATFPATFQLILAANPCPCGNFGIK
CEEEEECCCCCCHHHHHHHHCCHHCCCEEEEECCCCEECCCEEEEEEECCCCCCCCCCCC
DAECVCSSSARRKYMGRIHRPIIDRIDIQLMINRISIAELRSGLSGSSGMTTESVRNTVL
CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEEE
LARERTLYRMKDTPWSTNSQASSDWLQRQPILPGATDSLDIAFQRGLLSMRGYHKVIRLA
EEECCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WTIADITGVSKLTKSEIDKALIFRTSGQYGG
HHHHHHHHHHHHHHHHHCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]