Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

Click here to switch to the map view.

The map label for this gene is 28572454

Identifier: 28572454

GI number: 28572454

Start: 335653

End: 336300

Strand: Direct

Name: 28572454

Synonym: TW298

Alternate gene names: NA

Gene position: 335653-336300 (Clockwise)

Preceding gene: 28572453

Following gene: 28572455

Centisome position: 36.25

GC content: 47.99

Gene sequence:

>648_bases
ATGATGAATCCAAAAAGGCCTTGTATGATAACCCCCGTACCCGTTATGCTAAACCTTGATGATGGGTTGTATTGTTCGGG
GGTTTTTATGAAGCGCATTCTTATGCTGTTATCCTTATTCGGATTCCAGCCGGTTATGTCAGCTGAGCGCGCCAGCCTCT
CGGATTTAAGTGGCCTGCCCTTATCAGGGCCTGGGATTGGAGGGCGCTTCTCATCTTCCACCAAAGACCTATCTGTTCGT
TATGATAGTCCCGGTAATGCACTGGAGCTTGGGTTCTGTTCATTCTTGTTCAGTTCATTCTTGTCCAGTTCATTCTTGTC
CAGGGTAATAAATTGCATTAAGGCCAAGTCGGCAGCTAATGATGCAGTTTCACGGGCAGCGGGCAAATTTCCGGGAAGCA
CTCTTATTGGTGGAAAGGGTGACGCTTTTCGTCACTGTTATTGGAGCGCTCGCATGACAATCGACATGGGTGAAGCAAAG
GGATTCGGGGATAGACACGAGGCTTTTTCGCATGGTCCTGAGAGGTATATGGATCTAAAGAATAATGAAATTGGCCGTTC
TGTTGGGGCTGTTTACAGAAGTTACGAGTCGGCTTCAAGAAGATGTGAGTTTCTTGCGCACACTGACCAGCTTGTCACCC
GGGCATAG

Upstream 100 bases:

>100_bases
CTCTGTGTGAATCCTGACAGGGCGTTTTACTACGAGTTTGAAGATATAGGTAAACCTAGGGTTTTACAGCTTGTAAAAGG
CGGTTCATATTATCGTTGTT

Downstream 100 bases:

>100_bases
ATATTCTTTAGTCCAGCATGAGTTCGCCAGTACCTTCAGAGTTGCCCTGTACTCCGAGGCGTTCAAGAAAATATAGTCTT
CTTCTCACCTGTGCTCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MMNPKRPCMITPVPVMLNLDDGLYCSGVFMKRILMLLSLFGFQPVMSAERASLSDLSGLPLSGPGIGGRFSSSTKDLSVR
YDSPGNALELGFCSFLFSSFLSSSFLSRVINCIKAKSAANDAVSRAAGKFPGSTLIGGKGDAFRHCYWSARMTIDMGEAK
GFGDRHEAFSHGPERYMDLKNNEIGRSVGAVYRSYESASRRCEFLAHTDQLVTRA

Sequences:

>Translated_215_residues
MMNPKRPCMITPVPVMLNLDDGLYCSGVFMKRILMLLSLFGFQPVMSAERASLSDLSGLPLSGPGIGGRFSSSTKDLSVR
YDSPGNALELGFCSFLFSSFLSSSFLSRVINCIKAKSAANDAVSRAAGKFPGSTLIGGKGDAFRHCYWSARMTIDMGEAK
GFGDRHEAFSHGPERYMDLKNNEIGRSVGAVYRSYESASRRCEFLAHTDQLVTRA
>Mature_215_residues
MMNPKRPCMITPVPVMLNLDDGLYCSGVFMKRILMLLSLFGFQPVMSAERASLSDLSGLPLSGPGIGGRFSSSTKDLSVR
YDSPGNALELGFCSFLFSSFLSSSFLSRVINCIKAKSAANDAVSRAAGKFPGSTLIGGKGDAFRHCYWSARMTIDMGEAK
GFGDRHEAFSHGPERYMDLKNNEIGRSVGAVYRSYESASRRCEFLAHTDQLVTRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23425; Mature: 23425

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNPKRPCMITPVPVMLNLDDGLYCSGVFMKRILMLLSLFGFQPVMSAERASLSDLSGLP
CCCCCCCEEECCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
LSGPGIGGRFSSSTKDLSVRYDSPGNALELGFCSFLFSSFLSSSFLSRVINCIKAKSAAN
CCCCCCCCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAVSRAAGKFPGSTLIGGKGDAFRHCYWSARMTIDMGEAKGFGDRHEAFSHGPERYMDLK
HHHHHHHCCCCCCEEECCCCCHHHHHEEEEEEEEECCCCCCCCCHHHHHHCCHHHHHCCC
NNEIGRSVGAVYRSYESASRRCEFLAHTDQLVTRA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMNPKRPCMITPVPVMLNLDDGLYCSGVFMKRILMLLSLFGFQPVMSAERASLSDLSGLP
CCCCCCCEEECCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
LSGPGIGGRFSSSTKDLSVRYDSPGNALELGFCSFLFSSFLSSSFLSRVINCIKAKSAAN
CCCCCCCCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAVSRAAGKFPGSTLIGGKGDAFRHCYWSARMTIDMGEAKGFGDRHEAFSHGPERYMDLK
HHHHHHHCCCCCCEEECCCCCHHHHHEEEEEEEEECCCCCCCCCHHHHHHCCHHHHHCCC
NNEIGRSVGAVYRSYESASRRCEFLAHTDQLVTRA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA