| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572454
Identifier: 28572454
GI number: 28572454
Start: 335653
End: 336300
Strand: Direct
Name: 28572454
Synonym: TW298
Alternate gene names: NA
Gene position: 335653-336300 (Clockwise)
Preceding gene: 28572453
Following gene: 28572455
Centisome position: 36.25
GC content: 47.99
Gene sequence:
>648_bases ATGATGAATCCAAAAAGGCCTTGTATGATAACCCCCGTACCCGTTATGCTAAACCTTGATGATGGGTTGTATTGTTCGGG GGTTTTTATGAAGCGCATTCTTATGCTGTTATCCTTATTCGGATTCCAGCCGGTTATGTCAGCTGAGCGCGCCAGCCTCT CGGATTTAAGTGGCCTGCCCTTATCAGGGCCTGGGATTGGAGGGCGCTTCTCATCTTCCACCAAAGACCTATCTGTTCGT TATGATAGTCCCGGTAATGCACTGGAGCTTGGGTTCTGTTCATTCTTGTTCAGTTCATTCTTGTCCAGTTCATTCTTGTC CAGGGTAATAAATTGCATTAAGGCCAAGTCGGCAGCTAATGATGCAGTTTCACGGGCAGCGGGCAAATTTCCGGGAAGCA CTCTTATTGGTGGAAAGGGTGACGCTTTTCGTCACTGTTATTGGAGCGCTCGCATGACAATCGACATGGGTGAAGCAAAG GGATTCGGGGATAGACACGAGGCTTTTTCGCATGGTCCTGAGAGGTATATGGATCTAAAGAATAATGAAATTGGCCGTTC TGTTGGGGCTGTTTACAGAAGTTACGAGTCGGCTTCAAGAAGATGTGAGTTTCTTGCGCACACTGACCAGCTTGTCACCC GGGCATAG
Upstream 100 bases:
>100_bases CTCTGTGTGAATCCTGACAGGGCGTTTTACTACGAGTTTGAAGATATAGGTAAACCTAGGGTTTTACAGCTTGTAAAAGG CGGTTCATATTATCGTTGTT
Downstream 100 bases:
>100_bases ATATTCTTTAGTCCAGCATGAGTTCGCCAGTACCTTCAGAGTTGCCCTGTACTCCGAGGCGTTCAAGAAAATATAGTCTT CTTCTCACCTGTGCTCTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 215; Mature: 215
Protein sequence:
>215_residues MMNPKRPCMITPVPVMLNLDDGLYCSGVFMKRILMLLSLFGFQPVMSAERASLSDLSGLPLSGPGIGGRFSSSTKDLSVR YDSPGNALELGFCSFLFSSFLSSSFLSRVINCIKAKSAANDAVSRAAGKFPGSTLIGGKGDAFRHCYWSARMTIDMGEAK GFGDRHEAFSHGPERYMDLKNNEIGRSVGAVYRSYESASRRCEFLAHTDQLVTRA
Sequences:
>Translated_215_residues MMNPKRPCMITPVPVMLNLDDGLYCSGVFMKRILMLLSLFGFQPVMSAERASLSDLSGLPLSGPGIGGRFSSSTKDLSVR YDSPGNALELGFCSFLFSSFLSSSFLSRVINCIKAKSAANDAVSRAAGKFPGSTLIGGKGDAFRHCYWSARMTIDMGEAK GFGDRHEAFSHGPERYMDLKNNEIGRSVGAVYRSYESASRRCEFLAHTDQLVTRA >Mature_215_residues MMNPKRPCMITPVPVMLNLDDGLYCSGVFMKRILMLLSLFGFQPVMSAERASLSDLSGLPLSGPGIGGRFSSSTKDLSVR YDSPGNALELGFCSFLFSSFLSSSFLSRVINCIKAKSAANDAVSRAAGKFPGSTLIGGKGDAFRHCYWSARMTIDMGEAK GFGDRHEAFSHGPERYMDLKNNEIGRSVGAVYRSYESASRRCEFLAHTDQLVTRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23425; Mature: 23425
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNPKRPCMITPVPVMLNLDDGLYCSGVFMKRILMLLSLFGFQPVMSAERASLSDLSGLP CCCCCCCEEECCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC LSGPGIGGRFSSSTKDLSVRYDSPGNALELGFCSFLFSSFLSSSFLSRVINCIKAKSAAN CCCCCCCCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAVSRAAGKFPGSTLIGGKGDAFRHCYWSARMTIDMGEAKGFGDRHEAFSHGPERYMDLK HHHHHHHCCCCCCEEECCCCCHHHHHEEEEEEEEECCCCCCCCCHHHHHHCCHHHHHCCC NNEIGRSVGAVYRSYESASRRCEFLAHTDQLVTRA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MMNPKRPCMITPVPVMLNLDDGLYCSGVFMKRILMLLSLFGFQPVMSAERASLSDLSGLP CCCCCCCEEECCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC LSGPGIGGRFSSSTKDLSVRYDSPGNALELGFCSFLFSSFLSSSFLSRVINCIKAKSAAN CCCCCCCCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAVSRAAGKFPGSTLIGGKGDAFRHCYWSARMTIDMGEAKGFGDRHEAFSHGPERYMDLK HHHHHHHCCCCCCEEECCCCCHHHHHEEEEEEEEECCCCCCCCCHHHHHHCCHHHHHCCC NNEIGRSVGAVYRSYESASRRCEFLAHTDQLVTRA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA