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The map label for this gene is secY [H]

Identifier: 28572385

GI number: 28572385

Start: 253023

End: 254348

Strand: Direct

Name: secY [H]

Synonym: TW225

Alternate gene names: 28572385

Gene position: 253023-254348 (Clockwise)

Preceding gene: 28572384

Following gene: 28572386

Centisome position: 27.33

GC content: 46.68

Gene sequence:

>1326_bases
TTGTTTGGCGTAGTTAGGCGGATGTTTTCCACCACGGATCTAAGGCGGAAACTTCTCTTCAGCGTTTTTATCATTGTTAT
TTTTAGGCTTGGTTCGTTCATTCCATCCCCGTACGTAAATTTTACGAATGTTCAGGTATGTCTCGCCGCCAATTCCGGTG
CGACTGGTATATACGAACTAATCAACTTGTTCAGCGGCGGTGCGCTACTTCAGCTCTCTGTTTTTGCCCTGGGTGTTATG
CCGTATATAACTTCTTCAATTATTATTCAGCTCCTAAGGGTTGTTGTACCCAGATTCGAGCAGCTCTACAAACAGGGTCA
AGAGGGCCAGGCCAAGCTTATCCAGTACACCCGATACCTTACAATAGGCCTCGCGGTGTTGCAGTCTACAACCCTTATAA
CAGTTGCACGATCCGGTGCGCTTTTTGCGGCATCTAATAGCCCGGCATGCTCTTCGCTTCTAACGGATGATAGCTGGTAT
TCGACCATAATAATCGTTATTGTCATGACAGCTGGTACAGGTCTTATTATGTGGCTTGGTGAGCTTATAACCGAGCGCGG
TATTGGTAACGGGATGAGCATCTTGATTTTTACCTCGATTGCTGCAGGGTTCCCCGGTGTGCTTGTTGGGGTGTATCAGA
CAAGAGGTTTTGGGATGTTTTCGACTGTTGTCATCACCTCCCTTGTGGTTATGGTCGGAGTTGTTTTTGTGGAACAATCG
CAAAGGCGTGTGCCTGTCCAGTACGCAAAGCGGGTCGTTGGCAGACGTATCCTCGGTGGCGGTAGTACGTATTTGCCCAT
AAAACTGAATATGGCTGGGGTTGTTCCTGTTATCTTTGCTTCCGCCATATTGCGCGTTCCGTCTATTATTGCCCAGTTTA
GCCAGCCAGCTCCGGGACAGCCTCCAGCAGCTTGGGTTGTTTGGATAAACGAGAATTTTACAACAGGAAACAGTCCGTTC
TATATTGCCCTGTACTTCTTTATGATTGTTGGTTTTACTTATTTTTATGTTGCTGTTACCTTTAACCCAACTGAGATAGC
TGACAATATGAAGAATTATGGGGGCTTTATATCAGGTATACGTCCTGGGGTTCCGACCGCAAATTATCTTTCATACATAA
TCAAGCGCATTACACTGCCCGGTTCTCTGTATTTAGGTATCGTTTCCCTGATACCGCTAATTGCCTTTGCTCTCTTCGGG
TTGAGTGCAGATATTCCCCTCGGCGGGACCTCTGTGCTGATTATGGTTGGTGTTGGCCTGGATACCGTAAAACAGATTGA
TGCGCAAATGCAACAGAGGCATTACAGGGGCTTGTTGACAGCCTAA

Upstream 100 bases:

>100_bases
TATTACTGTTGACAAAGCCTCCGCCGCGGCCGTGGAGAAGATAACATCCGCGGCGGGTACGGTAACCCAAGCGCGCTAAG
CACTGCAAATAAGGAGAGTT

Downstream 100 bases:

>100_bases
TGCGGGCTATAATGGTCGGCCCTCCGGGGTCTGGAAAAGGTACCCAGTGTGGTCTTATTCAGAGCAGACTTGGTATATCT
GTCATCGCAACCGGTGATGT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MFGVVRRMFSTTDLRRKLLFSVFIIVIFRLGSFIPSPYVNFTNVQVCLAANSGATGIYELINLFSGGALLQLSVFALGVM
PYITSSIIIQLLRVVVPRFEQLYKQGQEGQAKLIQYTRYLTIGLAVLQSTTLITVARSGALFAASNSPACSSLLTDDSWY
STIIIVIVMTAGTGLIMWLGELITERGIGNGMSILIFTSIAAGFPGVLVGVYQTRGFGMFSTVVITSLVVMVGVVFVEQS
QRRVPVQYAKRVVGRRILGGGSTYLPIKLNMAGVVPVIFASAILRVPSIIAQFSQPAPGQPPAAWVVWINENFTTGNSPF
YIALYFFMIVGFTYFYVAVTFNPTEIADNMKNYGGFISGIRPGVPTANYLSYIIKRITLPGSLYLGIVSLIPLIAFALFG
LSADIPLGGTSVLIMVGVGLDTVKQIDAQMQQRHYRGLLTA

Sequences:

>Translated_441_residues
MFGVVRRMFSTTDLRRKLLFSVFIIVIFRLGSFIPSPYVNFTNVQVCLAANSGATGIYELINLFSGGALLQLSVFALGVM
PYITSSIIIQLLRVVVPRFEQLYKQGQEGQAKLIQYTRYLTIGLAVLQSTTLITVARSGALFAASNSPACSSLLTDDSWY
STIIIVIVMTAGTGLIMWLGELITERGIGNGMSILIFTSIAAGFPGVLVGVYQTRGFGMFSTVVITSLVVMVGVVFVEQS
QRRVPVQYAKRVVGRRILGGGSTYLPIKLNMAGVVPVIFASAILRVPSIIAQFSQPAPGQPPAAWVVWINENFTTGNSPF
YIALYFFMIVGFTYFYVAVTFNPTEIADNMKNYGGFISGIRPGVPTANYLSYIIKRITLPGSLYLGIVSLIPLIAFALFG
LSADIPLGGTSVLIMVGVGLDTVKQIDAQMQQRHYRGLLTA
>Mature_441_residues
MFGVVRRMFSTTDLRRKLLFSVFIIVIFRLGSFIPSPYVNFTNVQVCLAANSGATGIYELINLFSGGALLQLSVFALGVM
PYITSSIIIQLLRVVVPRFEQLYKQGQEGQAKLIQYTRYLTIGLAVLQSTTLITVARSGALFAASNSPACSSLLTDDSWY
STIIIVIVMTAGTGLIMWLGELITERGIGNGMSILIFTSIAAGFPGVLVGVYQTRGFGMFSTVVITSLVVMVGVVFVEQS
QRRVPVQYAKRVVGRRILGGGSTYLPIKLNMAGVVPVIFASAILRVPSIIAQFSQPAPGQPPAAWVVWINENFTTGNSPF
YIALYFFMIVGFTYFYVAVTFNPTEIADNMKNYGGFISGIRPGVPTANYLSYIIKRITLPGSLYLGIVSLIPLIAFALFG
LSADIPLGGTSVLIMVGVGLDTVKQIDAQMQQRHYRGLLTA

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=432, Percent_Identity=41.4351851851852, Blast_Score=269, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47869; Mature: 47869

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGVVRRMFSTTDLRRKLLFSVFIIVIFRLGSFIPSPYVNFTNVQVCLAANSGATGIYEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHH
INLFSGGALLQLSVFALGVMPYITSSIIIQLLRVVVPRFEQLYKQGQEGQAKLIQYTRYL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TIGLAVLQSTTLITVARSGALFAASNSPACSSLLTDDSWYSTIIIVIVMTAGTGLIMWLG
HHHHHHHHHHHEEEEECCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH
ELITERGIGNGMSILIFTSIAAGFPGVLVGVYQTRGFGMFSTVVITSLVVMVGVVFVEQS
HHHHHCCCCCCCHHHHHHHHHCCCCHHEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
QRRVPVQYAKRVVGRRILGGGSTYLPIKLNMAGVVPVIFASAILRVPSIIAQFSQPAPGQ
CCCCCHHHHHHHHHHHEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PPAAWVVWINENFTTGNSPFYIALYFFMIVGFTYFYVAVTFNPTEIADNMKNYGGFISGI
CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCHHCCC
RPGVPTANYLSYIIKRITLPGSLYLGIVSLIPLIAFALFGLSADIPLGGTSVLIMVGVGL
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCH
DTVKQIDAQMQQRHYRGLLTA
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFGVVRRMFSTTDLRRKLLFSVFIIVIFRLGSFIPSPYVNFTNVQVCLAANSGATGIYEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHH
INLFSGGALLQLSVFALGVMPYITSSIIIQLLRVVVPRFEQLYKQGQEGQAKLIQYTRYL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TIGLAVLQSTTLITVARSGALFAASNSPACSSLLTDDSWYSTIIIVIVMTAGTGLIMWLG
HHHHHHHHHHHEEEEECCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH
ELITERGIGNGMSILIFTSIAAGFPGVLVGVYQTRGFGMFSTVVITSLVVMVGVVFVEQS
HHHHHCCCCCCCHHHHHHHHHCCCCHHEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
QRRVPVQYAKRVVGRRILGGGSTYLPIKLNMAGVVPVIFASAILRVPSIIAQFSQPAPGQ
CCCCCHHHHHHHHHHHEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PPAAWVVWINENFTTGNSPFYIALYFFMIVGFTYFYVAVTFNPTEIADNMKNYGGFISGI
CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCHHCCC
RPGVPTANYLSYIIKRITLPGSLYLGIVSLIPLIAFALFGLSADIPLGGTSVLIMVGVGL
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCH
DTVKQIDAQMQQRHYRGLLTA
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10542330 [H]