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The map label for this gene is ftsY [H]

Identifier: 28572365

GI number: 28572365

Start: 242928

End: 243596

Strand: Direct

Name: ftsY [H]

Synonym: TW205

Alternate gene names: 28572365

Gene position: 242928-243596 (Clockwise)

Preceding gene: 28572364

Following gene: 28572366

Centisome position: 26.24

GC content: 49.33

Gene sequence:

>669_bases
TTGCGGGAGTATCTTGAATGCCGGCTATCTTCCTTTGATCCTACGCTGCGACTCACAAATCACCCGTCTGTTATCCTTAT
CGTCGGCGTTAATGGGGTTGGCAAGACTGCGACCGCTGGAAAGCTTGCAAATCTTTTACATCTACGAGGCAAGAAGGTCC
TGTTAGCTGCTGCTGACACCTTTCGAGCTGCCGCTGTTGAGCAGCTTAGTATCTGGGCTCAGCGCGCAGGTGTTGAAATA
ATTACCCCCCCCAAGCCACGCATAGATCCGGCATCCGTTGCATATTCTTCCGTCAAAAAGGCGATTGATGATAATTATGA
TGTTGTGGTTATTGACACCGCGGGGCGTCTTCACAATAAGGCAAATCTCATGGCTGAGCTCGAGAGAATAGCGCGGGTTA
CCGAAAAGCTTGTCAGCATAGATGAGGTCTTACTGGTGCTTGATGCAACTACCGGACAAAATGGCCTGACTCAGGCTAGA
TCATTCCTTGAGGCTGTGAGTGTAACCGGAATAGTCTTATCCAAGACTGACTCGTCCGCAAAGGCGGGTTTTATTTTTCA
AGTGCAGGAGAGCACGGGCGTGCCTGTAAAGCTCATTGGCACAGGTGAAGCAATTGATGATATAGCAGGTTTTGCACCAT
ACGCATTTGTTGCGCAGATCTTCGGTTAG

Upstream 100 bases:

>100_bases
TTTTGAAATCCTGCTTAGGGCTGATTTCGGATATTCTGTAGCGCATGACATAGTCGCTTCTATTGGGAATAAGTCGAATG
TAGATGATCGTGAACGGTGT

Downstream 100 bases:

>100_bases
TTTGTCTTCGAGCTACCTTGATTCATGCTCGGTTTGTGTTTTTTATTTTATTCTGACAGAATCATCTGGTCGTCTTTTTC
CGCGTTCTAGGGCTTGTTGC

Product: SRP54-type protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MREYLECRLSSFDPTLRLTNHPSVILIVGVNGVGKTATAGKLANLLHLRGKKVLLAAADTFRAAAVEQLSIWAQRAGVEI
ITPPKPRIDPASVAYSSVKKAIDDNYDVVVIDTAGRLHNKANLMAELERIARVTEKLVSIDEVLLVLDATTGQNGLTQAR
SFLEAVSVTGIVLSKTDSSAKAGFIFQVQESTGVPVKLIGTGEAIDDIAGFAPYAFVAQIFG

Sequences:

>Translated_222_residues
MREYLECRLSSFDPTLRLTNHPSVILIVGVNGVGKTATAGKLANLLHLRGKKVLLAAADTFRAAAVEQLSIWAQRAGVEI
ITPPKPRIDPASVAYSSVKKAIDDNYDVVVIDTAGRLHNKANLMAELERIARVTEKLVSIDEVLLVLDATTGQNGLTQAR
SFLEAVSVTGIVLSKTDSSAKAGFIFQVQESTGVPVKLIGTGEAIDDIAGFAPYAFVAQIFG
>Mature_222_residues
MREYLECRLSSFDPTLRLTNHPSVILIVGVNGVGKTATAGKLANLLHLRGKKVLLAAADTFRAAAVEQLSIWAQRAGVEI
ITPPKPRIDPASVAYSSVKKAIDDNYDVVVIDTAGRLHNKANLMAELERIARVTEKLVSIDEVLLVLDATTGQNGLTQAR
SFLEAVSVTGIVLSKTDSSAKAGFIFQVQESTGVPVKLIGTGEAIDDIAGFAPYAFVAQIFG

Specific function: Functional homolog of SRP receptor. Probably involved in the reception and insertion of a subset of proteins at the membrane [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI226371618, Length=200, Percent_Identity=34, Blast_Score=124, Evalue=5e-29,
Organism=Homo sapiens, GI4507215, Length=200, Percent_Identity=34, Blast_Score=124, Evalue=7e-29,
Organism=Homo sapiens, GI23308697, Length=227, Percent_Identity=31.7180616740088, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI295424842, Length=227, Percent_Identity=31.7180616740088, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI89061728, Length=136, Percent_Identity=30.8823529411765, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1789874, Length=224, Percent_Identity=47.3214285714286, Blast_Score=194, Evalue=3e-51,
Organism=Escherichia coli, GI1788963, Length=225, Percent_Identity=35.5555555555556, Blast_Score=134, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI17539958, Length=214, Percent_Identity=35.981308411215, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI193206261, Length=205, Percent_Identity=35.609756097561, Blast_Score=97, Evalue=9e-21,
Organism=Saccharomyces cerevisiae, GI6325345, Length=212, Percent_Identity=35.8490566037736, Blast_Score=134, Evalue=1e-32,
Organism=Saccharomyces cerevisiae, GI6320498, Length=215, Percent_Identity=30.6976744186047, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17647949, Length=209, Percent_Identity=32.5358851674641, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24641198, Length=225, Percent_Identity=31.1111111111111, Blast_Score=87, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 23674; Mature: 23674

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREYLECRLSSFDPTLRLTNHPSVILIVGVNGVGKTATAGKLANLLHLRGKKVLLAAADT
CCCHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECHH
FRAAAVEQLSIWAQRAGVEIITPPKPRIDPASVAYSSVKKAIDDNYDVVVIDTAGRLHNK
HHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
ANLMAELERIARVTEKLVSIDEVLLVLDATTGQNGLTQARSFLEAVSVTGIVLSKTDSSA
HHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHEEEEECCCCCC
KAGFIFQVQESTGVPVKLIGTGEAIDDIAGFAPYAFVAQIFG
CCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MREYLECRLSSFDPTLRLTNHPSVILIVGVNGVGKTATAGKLANLLHLRGKKVLLAAADT
CCCHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECHH
FRAAAVEQLSIWAQRAGVEIITPPKPRIDPASVAYSSVKKAIDDNYDVVVIDTAGRLHNK
HHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
ANLMAELERIARVTEKLVSIDEVLLVLDATTGQNGLTQARSFLEAVSVTGIVLSKTDSSA
HHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHEEEEECCCCCC
KAGFIFQVQESTGVPVKLIGTGEAIDDIAGFAPYAFVAQIFG
CCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]