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The map label for this gene is cspC [H]

Identifier: 284988615

GI number: 284988615

Start: 1891459

End: 1891671

Strand: Direct

Name: cspC [H]

Synonym: YpsIP31758_5000

Alternate gene names: 284988615

Gene position: 1891459-1891671 (Clockwise)

Preceding gene: 153946875

Following gene: 153950781

Centisome position: 40.05

GC content: 46.01

Gene sequence:

>213_bases
ATGTCTAACATGATGAAAGGTCAAGTAAAGTGGTTCAACGAGTCTAAAGGCTTCGGTTTCATCACTCCAGCTGATGGCAG
CAAAGACGTGTTCGTTCACTTCTCTGCTATCCAAGATCAAGGCTTCAAGACCCTGGCTGAAGGCCAGAATGTACAGTTCT
CTATCGAGAACGGTGCTAAAGGTCCGTCTGCAGCAAACGTAACTGCAATCTAA

Upstream 100 bases:

>100_bases
TTCACTGACGAATTTCCTTCATAGTGCCTCCATAAGTAACGACTGATAACCGGCTATAACACGCCCATGGCGGCAAAATT
TTTTAATAAAGGAAATACAC

Downstream 100 bases:

>100_bases
TTGGCCTTTGGCTGATTATAAAAAAACCCGCTAAGGCGGGTTTTTTACTGTCTGTAATAAAGTCCCTTCTGTAATAAAAT
CCCCATCTGTAATAAAGCAC

Product: cold shock protein

Products: NA

Alternate protein names: CSP-C [H]

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQDQGFKTLAEGQNVQFSIENGAKGPSAANVTAI

Sequences:

>Translated_70_residues
MSNMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQDQGFKTLAEGQNVQFSIENGAKGPSAANVTAI
>Mature_69_residues
SNMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQDQGFKTLAEGQNVQFSIENGAKGPSAANVTAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=84.8484848484848, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=83.3333333333333, Blast_Score=114, Evalue=1e-27,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=71.4285714285714, Blast_Score=106, Evalue=3e-25,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=74.6268656716418, Blast_Score=105, Evalue=4e-25,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=71.4285714285714, Blast_Score=104, Evalue=1e-24,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=68.5714285714286, Blast_Score=102, Evalue=5e-24,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=50.7462686567164, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=47.7611940298507, Blast_Score=64, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=46.031746031746, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7514; Mature: 7382

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQDQGFKTLAEGQNVQFSIENGAK
CCCCCCCEEEEEECCCCCEEEECCCCCCEEEEEEEECCCCCCEECCCCCCEEEEECCCCC
GPSAANVTAI
CCCCCEEEEC
>Mature Secondary Structure 
SNMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQDQGFKTLAEGQNVQFSIENGAK
CCCCCCEEEEEECCCCCEEEECCCCCCEEEEEEEECCCCCCEECCCCCCEEEEECCCCC
GPSAANVTAI
CCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12384590; 12704152 [H]