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The map label for this gene is ybeY [C]

Identifier: 284159397

GI number: 284159397

Start: 672161

End: 673474

Strand: Reverse

Name: ybeY [C]

Synonym: BTH_I0589

Alternate gene names: 284159397

Gene position: 673474-672161 (Counterclockwise)

Preceding gene: 83720402

Following gene: 83718525

Centisome position: 17.68

GC content: 69.79

Gene sequence:

>1314_bases
ATGCGGGCAACGGGCCGCGCACGCGGCGCGCGGCGTCCGCTTCGCGTCGTTCGGCGGCCTGGCTGCCCGGTCACTCGGCC
GAATCGCCCGGTCCATCAATCCATCGGGCCGACGAGTCGCCTCGCTCGCGTGGACGTGCATCCGAGCGCCTGCGCAGTAT
CGATCGAAATCGCCCCCCTCGCGGCGCGCGGTCGGCGAAATACCGACCCTGCAGGCACCCCGCTCGCCGATTCCGCCCCG
CTTCGGCAGCCACTGCGCTCCGTTCGCGCGCACCGGTTCGGCATCCGAGCGATGACGCGCGGCCGCGCGATCACGCGCAC
GTCGAACGAACCGTCGTCGCATGCGGGCCATGCATCGCCGAAGCCGCCCGCCAACCACCGTCCGGGCCGCCGCCCGACAA
GTACCCCGAACCGCCGCGCGCCGGCCCCTCCCCCATCCGCGACGCCCCGCGAAACGCCCTCCGGGCGCTCGTCCGTTTGG
TGTATCCTCAACCGCGTTCAAACCGACGTCAACGTGATGAAATCGTCCCGTTCCTCCAAGTCCGCACGCGCCGAAGCGGC
GCAACCCGAGTTTCCCCGCCTGTCGCTGTTCGATGCGAAAGGCAAAGTCAAGACGGTCGAAGCACAGGCGCTGCGCGTCG
ACTTCGCCGACGGCCGCAGCCTGATGTTCGACCTGTCCGGCAGCTCGGGCGACGCGGCCGTCGCGATCGTCGCGCAGCAC
ACGGACCCGTCGCTGCGCGCGACGATCGCGCTGCGCCCCGAGCACTATGACAGCGTGACGGTCGAAGCCGGCGCCGACGA
GAACCCCGACTTCGCCCACGACGCGACGGACGATGCGGGCGAAGACGCGCCGAACCGCGAGCCCGAGCTCGACCTCGCGG
TTCAGTACGGCGACGAGATCGGCGACGCGCAGCGCAGGTCGCTGCCCAAGCGCAAGGTGATCGCCGAATGGCTCGAGCCC
GCGATCTTCTCCGACGCGCAGTTCACCGTGCGCTTCGTCGGCGCCGACGAGGGACGCACGCTCAACCACAGTTATCGGCA
CAAGGACTACGCGACGAACGTGCTCACCTTCGCGTACGGCGAGGAGCCGGACGGCGTCACGGTCGCGGATCTCGTGCTGT
GCTGCCCCGTCGTCGAAAAGGAAGCGCGCGAACAGGGCAAGACGCTCGTCGCGCATTACGCGCATCTGCTCGTGCACGGC
GCGCTGCACGCGCAGGGCTACGACCACGAGCGCGGCGAGGAGGACGCGGCCGAGATGGAAGCGCTCGAAATCGACATCCT
CGCGAAGCTCGGCTTCCCGAATCCGTACCGCTGA

Upstream 100 bases:

>100_bases
ACGACGAGTTCCACGCGCAGCACAAGGACGAGTAAGCCGCGCGGGCCGTCCGGGGGAAACGATCGGGCCGACGCGATCGA
TGCGCGCCGGCGGTCGCGCG

Downstream 100 bases:

>100_bases
TTCGCGCCGCGCCGCACGACCCGCCCGACCCGCCCGCCGTGAGCCGCCCCGCCCCCGCCCGCTGCCCCTATCCTCCATCG
CTCGGCGAAGCGCGCTACCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MRATGRARGARRPLRVVRRPGCPVTRPNRPVHQSIGPTSRLARVDVHPSACAVSIEIAPLAARGRRNTDPAGTPLADSAP
LRQPLRSVRAHRFGIRAMTRGRAITRTSNEPSSHAGHASPKPPANHRPGRRPTSTPNRRAPAPPPSATPRETPSGRSSVW
CILNRVQTDVNVMKSSRSSKSARAEAAQPEFPRLSLFDAKGKVKTVEAQALRVDFADGRSLMFDLSGSSGDAAVAIVAQH
TDPSLRATIALRPEHYDSVTVEAGADENPDFAHDATDDAGEDAPNREPELDLAVQYGDEIGDAQRRSLPKRKVIAEWLEP
AIFSDAQFTVRFVGADEGRTLNHSYRHKDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHG
ALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR

Sequences:

>Translated_437_residues
MRATGRARGARRPLRVVRRPGCPVTRPNRPVHQSIGPTSRLARVDVHPSACAVSIEIAPLAARGRRNTDPAGTPLADSAP
LRQPLRSVRAHRFGIRAMTRGRAITRTSNEPSSHAGHASPKPPANHRPGRRPTSTPNRRAPAPPPSATPRETPSGRSSVW
CILNRVQTDVNVMKSSRSSKSARAEAAQPEFPRLSLFDAKGKVKTVEAQALRVDFADGRSLMFDLSGSSGDAAVAIVAQH
TDPSLRATIALRPEHYDSVTVEAGADENPDFAHDATDDAGEDAPNREPELDLAVQYGDEIGDAQRRSLPKRKVIAEWLEP
AIFSDAQFTVRFVGADEGRTLNHSYRHKDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHG
ALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR
>Mature_437_residues
MRATGRARGARRPLRVVRRPGCPVTRPNRPVHQSIGPTSRLARVDVHPSACAVSIEIAPLAARGRRNTDPAGTPLADSAP
LRQPLRSVRAHRFGIRAMTRGRAITRTSNEPSSHAGHASPKPPANHRPGRRPTSTPNRRAPAPPPSATPRETPSGRSSVW
CILNRVQTDVNVMKSSRSSKSARAEAAQPEFPRLSLFDAKGKVKTVEAQALRVDFADGRSLMFDLSGSSGDAAVAIVAQH
TDPSLRATIALRPEHYDSVTVEAGADENPDFAHDATDDAGEDAPNREPELDLAVQYGDEIGDAQRRSLPKRKVIAEWLEP
AIFSDAQFTVRFVGADEGRTLNHSYRHKDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHG
ALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=153, Percent_Identity=44.4444444444444, Blast_Score=102, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BURTA (Q2T103)

Other databases:

- EMBL:   CP000086
- RefSeq:   YP_441146.3
- ProteinModelPortal:   Q2T103
- SMR:   Q2T103
- STRING:   Q2T103
- GeneID:   3849896
- GenomeReviews:   CP000086_GR
- KEGG:   bte:BTH_I0589
- TIGR:   BTH_I0589
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- ProtClustDB:   PRK13963
- BioCyc:   BTHA271848:BTH_I0589-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 47550; Mature: 47550

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRATGRARGARRPLRVVRRPGCPVTRPNRPVHQSIGPTSRLARVDVHPSACAVSIEIAPL
CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHCCCCHHHEEEEECCCCCEEEEEEEEEE
AARGRRNTDPAGTPLADSAPLRQPLRSVRAHRFGIRAMTRGRAITRTSNEPSSHAGHASP
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC
KPPANHRPGRRPTSTPNRRAPAPPPSATPRETPSGRSSVWCILNRVQTDVNVMKSSRSSK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCH
SARAEAAQPEFPRLSLFDAKGKVKTVEAQALRVDFADGRSLMFDLSGSSGDAAVAIVAQH
HHHHHCCCCCCCCEEEEECCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCEEEEEEEEC
TDPSLRATIALRPEHYDSVTVEAGADENPDFAHDATDDAGEDAPNREPELDLAVQYGDEI
CCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
GDAQRRSLPKRKVIAEWLEPAIFSDAQFTVRFVGADEGRTLNHSYRHKDYATNVLTFAYG
CCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHCHHHHCCEEEEEEC
EEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGYDHERGEEDAAEME
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
ALEIDILAKLGFPNPYR
HHEEEEEEECCCCCCCC
>Mature Secondary Structure
MRATGRARGARRPLRVVRRPGCPVTRPNRPVHQSIGPTSRLARVDVHPSACAVSIEIAPL
CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHCCCCHHHEEEEECCCCCEEEEEEEEEE
AARGRRNTDPAGTPLADSAPLRQPLRSVRAHRFGIRAMTRGRAITRTSNEPSSHAGHASP
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC
KPPANHRPGRRPTSTPNRRAPAPPPSATPRETPSGRSSVWCILNRVQTDVNVMKSSRSSK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCH
SARAEAAQPEFPRLSLFDAKGKVKTVEAQALRVDFADGRSLMFDLSGSSGDAAVAIVAQH
HHHHHCCCCCCCCEEEEECCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCEEEEEEEEC
TDPSLRATIALRPEHYDSVTVEAGADENPDFAHDATDDAGEDAPNREPELDLAVQYGDEI
CCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
GDAQRRSLPKRKVIAEWLEPAIFSDAQFTVRFVGADEGRTLNHSYRHKDYATNVLTFAYG
CCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHCHHHHCCEEEEEEC
EEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGYDHERGEEDAAEME
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
ALEIDILAKLGFPNPYR
HHEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA