| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is ifcA [H]
Identifier: 28379534
GI number: 28379534
Start: 2791021
End: 2792502
Strand: Direct
Name: ifcA [H]
Synonym: lp_3125
Alternate gene names: 28379534
Gene position: 2791021-2792502 (Clockwise)
Preceding gene: 28379530
Following gene: 28379535
Centisome position: 84.36
GC content: 49.19
Gene sequence:
>1482_bases ATGACGTTAGCAAAACATGATTCATACGATATTGTCGTCGTTGGTACCGGAGCAGCAGGAACAGCGGCAGCCCTAGAAGC CGCACAACACGGCGCGTCCGTGTTATTACTCGAAAAAGGACGCCATACTGGCGGTAGCAGCAATTACACTGAGGGTCTCT TTGCCGTCGACTCATACTTACAAAAGGCCCAAAACATCAACGTTTCCGCCACTGACGTTTTAAAAGAAGAAGTCGACTAT TCTAAATATCGCGCTGATTCTCGAATCTGGCGTCGTTACTTGGACGATAGCGCCAACACGGTGCAATGGCTTAAAGATCA AGGTGTCGAATACGAAGGCGTACAAGCAATGGGTGCCGGCGAAGCCACGTGGCATATTTATAAAGGAATGGGCCAAGCTG TCTTACATGACGCTTTACAACCACAAGCACAAAAGCTGGGGGTCGAACTACTGACTTCCACGACCGCCATCACGCTACAT CAAGCCACTGACGGTGCAATTACCGGTGTAATGATTCAAAGTGCCGCCACTAATGAGACCCAAGTCATCAATACGGCCGC AGTCATTCTTGCTACCGGTGGTTACCTCAATAATCCCGACATGATGCAGAAACTGACCCACTATGACACGCGCCGCTTAA TTCCAGTTAGTTCAGGTAAAGGAACTGGTGACGGTCTTCGGCTAGCGTGGCAAGCCGGTGCACAACAATATGGCACGGGG ATGGCGATGCTCTTTGGCGGTTACCTCAAAGATCCGAGCGAACCTTCCTTTAAGTACATGGCCTCCCAGATGGAAACAGC GGCCGGCCAGCAACCGTTGCTCTGGCTAAACGAACATGGGGAACGATTTGTCGATGAAGCTGTCGTTTATAACTTCTCAT ACGCCGGCAACGCGCTCTACACCCAAAACCAAGTATTCAGCATTCTCGACCAAGGTGTGATCAACAAAATGGCTCAGGAC GGGAACTTCATGGGCTTAGGTGTTTACGTTCGGCGGGGCGAAAAAATGACGAAACTCCAGGCTGAAATCGATGCAGCCGT GGCCGCCAATAAACCATTTATTTTTAAAGCCAATACGATTGAAGCACTGGCGACCAAAATGCACCTACCTGTTGATCAAG TCACCCATTCCATTCAAACTTACAACCAATATTGTGATAATGGTCAAGACGATGATTTCGGCAAGAATCCTGAATATCTC GTTAAAGTTTCGCAAGGTCCATTTTACGGCTTTGAACTCAATGTTGGTGCCTTTTGTACCATGGGCGGTCTCAAAGTAAC CACTAATAATGAAGTTTTAGACACTACTGGTCAGCCGATCACCGGTCTATACGCTGCTGGCAACGACGCCGCTGGACTAA CTGGTGATACGTATGGTCCTAACATGCCTGGAACCTGTGTTGGCTACGCCTTCTACTCTGGACGCAATTCCGGTCGGCAC GCGGCGCAATACACGCACCAGCAGTCAATCGTTAGTCATTAA
Upstream 100 bases:
>100_bases CCGTTATGATGAGGGTGTGATAGCGGTTACTTCATTATAGTAATGGTGAATTTAGCCGTCAAATGCTCATTAGATAACAA ATCAGTTTGGAGGAATTGAC
Downstream 100 bases:
>100_bases TTCCTTATTTATAAACCTATAACGACCTTCCCAGAATTTATCCGGAAAGGTCGTTTTACGCTGTCTTCACATTGATACGC TGATGGGCAGTTTAGTGACT
Product: fumarate reductase, flavoprotein subunit precursor, N-terminally truncated
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MTLAKHDSYDIVVVGTGAAGTAAALEAAQHGASVLLLEKGRHTGGSSNYTEGLFAVDSYLQKAQNINVSATDVLKEEVDY SKYRADSRIWRRYLDDSANTVQWLKDQGVEYEGVQAMGAGEATWHIYKGMGQAVLHDALQPQAQKLGVELLTSTTAITLH QATDGAITGVMIQSAATNETQVINTAAVILATGGYLNNPDMMQKLTHYDTRRLIPVSSGKGTGDGLRLAWQAGAQQYGTG MAMLFGGYLKDPSEPSFKYMASQMETAAGQQPLLWLNEHGERFVDEAVVYNFSYAGNALYTQNQVFSILDQGVINKMAQD GNFMGLGVYVRRGEKMTKLQAEIDAAVAANKPFIFKANTIEALATKMHLPVDQVTHSIQTYNQYCDNGQDDDFGKNPEYL VKVSQGPFYGFELNVGAFCTMGGLKVTTNNEVLDTTGQPITGLYAAGNDAAGLTGDTYGPNMPGTCVGYAFYSGRNSGRH AAQYTHQQSIVSH
Sequences:
>Translated_493_residues MTLAKHDSYDIVVVGTGAAGTAAALEAAQHGASVLLLEKGRHTGGSSNYTEGLFAVDSYLQKAQNINVSATDVLKEEVDY SKYRADSRIWRRYLDDSANTVQWLKDQGVEYEGVQAMGAGEATWHIYKGMGQAVLHDALQPQAQKLGVELLTSTTAITLH QATDGAITGVMIQSAATNETQVINTAAVILATGGYLNNPDMMQKLTHYDTRRLIPVSSGKGTGDGLRLAWQAGAQQYGTG MAMLFGGYLKDPSEPSFKYMASQMETAAGQQPLLWLNEHGERFVDEAVVYNFSYAGNALYTQNQVFSILDQGVINKMAQD GNFMGLGVYVRRGEKMTKLQAEIDAAVAANKPFIFKANTIEALATKMHLPVDQVTHSIQTYNQYCDNGQDDDFGKNPEYL VKVSQGPFYGFELNVGAFCTMGGLKVTTNNEVLDTTGQPITGLYAAGNDAAGLTGDTYGPNMPGTCVGYAFYSGRNSGRH AAQYTHQQSIVSH >Mature_492_residues TLAKHDSYDIVVVGTGAAGTAAALEAAQHGASVLLLEKGRHTGGSSNYTEGLFAVDSYLQKAQNINVSATDVLKEEVDYS KYRADSRIWRRYLDDSANTVQWLKDQGVEYEGVQAMGAGEATWHIYKGMGQAVLHDALQPQAQKLGVELLTSTTAITLHQ ATDGAITGVMIQSAATNETQVINTAAVILATGGYLNNPDMMQKLTHYDTRRLIPVSSGKGTGDGLRLAWQAGAQQYGTGM AMLFGGYLKDPSEPSFKYMASQMETAAGQQPLLWLNEHGERFVDEAVVYNFSYAGNALYTQNQVFSILDQGVINKMAQDG NFMGLGVYVRRGEKMTKLQAEIDAAVAANKPFIFKANTIEALATKMHLPVDQVTHSIQTYNQYCDNGQDDDFGKNPEYLV KVSQGPFYGFELNVGAFCTMGGLKVTTNNEVLDTTGQPITGLYAAGNDAAGLTGDTYGPNMPGTCVGYAFYSGRNSGRHA AQYTHQQSIVSH
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Escherichia coli, GI1788928, Length=263, Percent_Identity=25.4752851711027, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI71986328, Length=496, Percent_Identity=25.2016129032258, Blast_Score=95, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6320788, Length=477, Percent_Identity=23.8993710691824, Blast_Score=73, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 53243; Mature: 53112
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS00284 SERPIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLAKHDSYDIVVVGTGAAGTAAALEAAQHGASVLLLEKGRHTGGSSNYTEGLFAVDSYL CCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH QKAQNINVSATDVLKEEVDYSKYRADSRIWRRYLDDSANTVQWLKDQGVEYEGVQAMGAG HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEECCCC EATWHIYKGMGQAVLHDALQPQAQKLGVELLTSTTAITLHQATDGAITGVMIQSAATNET CCEEEHHHHCCHHHHHHHHCHHHHHHHHHHEECCEEEEEEECCCCCEEEEEEECCCCCCC QVINTAAVILATGGYLNNPDMMQKLTHYDTRRLIPVSSGKGTGDGLRLAWQAGAQQYGTG EEEEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEHHCHHHHCCC MAMLFGGYLKDPSEPSFKYMASQMETAAGQQPLLWLNEHGERFVDEAVVYNFSYAGNALY HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHEEEEECCCCEEE TQNQVFSILDQGVINKMAQDGNFMGLGVYVRRGEKMTKLQAEIDAAVAANKPFIFKANTI EHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHH EALATKMHLPVDQVTHSIQTYNQYCDNGQDDDFGKNPEYLVKVSQGPFYGFELNVGAFCT HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEE MGGLKVTTNNEVLDTTGQPITGLYAAGNDAAGLTGDTYGPNMPGTCVGYAFYSGRNSGRH ECCEEEECCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCH AAQYTHQQSIVSH HHHHHHHHHHHCC >Mature Secondary Structure TLAKHDSYDIVVVGTGAAGTAAALEAAQHGASVLLLEKGRHTGGSSNYTEGLFAVDSYL CCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH QKAQNINVSATDVLKEEVDYSKYRADSRIWRRYLDDSANTVQWLKDQGVEYEGVQAMGAG HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEECCCC EATWHIYKGMGQAVLHDALQPQAQKLGVELLTSTTAITLHQATDGAITGVMIQSAATNET CCEEEHHHHCCHHHHHHHHCHHHHHHHHHHEECCEEEEEEECCCCCEEEEEEECCCCCCC QVINTAAVILATGGYLNNPDMMQKLTHYDTRRLIPVSSGKGTGDGLRLAWQAGAQQYGTG EEEEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEHHCHHHHCCC MAMLFGGYLKDPSEPSFKYMASQMETAAGQQPLLWLNEHGERFVDEAVVYNFSYAGNALY HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHEEEEECCCCEEE TQNQVFSILDQGVINKMAQDGNFMGLGVYVRRGEKMTKLQAEIDAAVAANKPFIFKANTI EHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHH EALATKMHLPVDQVTHSIQTYNQYCDNGQDDDFGKNPEYLVKVSQGPFYGFELNVGAFCT HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEE MGGLKVTTNNEVLDTTGQPITGLYAAGNDAAGLTGDTYGPNMPGTCVGYAFYSGRNSGRH ECCEEEECCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCH AAQYTHQQSIVSH HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]