| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is linC [H]
Identifier: 28379461
GI number: 28379461
Start: 2696703
End: 2697458
Strand: Direct
Name: linC [H]
Synonym: lp_3033
Alternate gene names: 28379461
Gene position: 2696703-2697458 (Clockwise)
Preceding gene: 28379460
Following gene: 28379462
Centisome position: 81.51
GC content: 48.15
Gene sequence:
>756_bases ATGTTCAATTTTACAGATAAAGTCGTTATTGTTACAGGTGCACGCACGGGAATCGGCCTGAGTGCTGCCACTCTATTCGC CAAAGCAGGTGCTCACGTCATTTTAGCTGGCCATCATGAACCTAAAGACGAAGCCCAACAGCTAGTCGATCATGGCTACT CAGCCGTTTCATTCAAGTGTAACGTCGCTGATCCCAAAAACGTCGCCGGAATGGTGAAATTCGCAGTTGCTCAGTTTGGG CACCTCGACTATGCTTATAACGATGCTGGGATTCAAAGTCCAGTCACCGATACCGCCGATCTATCGGTTGAAGAATATGA TCATGTCATGGATACTAACTTAAAAGGCATGTTTCTCAGTATGAAGTACGAATTACGACAGATGCGTGCTCAGGGAACAC CAGCCGCAATCGTAAACTGTTCTTCAATGGGTGGTCTCGTTGGTATTGCTGATCGAACTGCCTACCACGCTTCAAAGCAC GGCGTCTTAGGCCTGACAAAGAGTAGCGCCTTAGAATACGCTGACCGGAATGTTCGGATCAACGCCGTGTGTCCAGGAAT CATTGATACACCAATGGTTGCCCGAATGGATGATACTGAACGACAGGAGATGGACGACCTAGTCCGCGAAATTCCCATGG GGCGTTTAGCTAAACCAGAAGAAGTCGCTCAAGTCGTACTCTTTCTTTGCAGTGATGCTGCCAGTTACATGGTTGGTCAA GCCGTCGCTGTTGACGGTGGTTACACTATTCACTAA
Upstream 100 bases:
>100_bases CAAAAAATTGGTCACATTAATGCTGGCGATTTGAAACAATTCCGTTCATCAAGAAATATTAAAATGCAGTTTGAAGAAGA TTAATTAAGGAGAGAAAGTC
Downstream 100 bases:
>100_bases TACGAGGAGGATCAGAATGACCAAGGTTTTAATTTTAGGGGCTAACGGTCGAATTGCGCGGATTGTGGAACAACGACTCT TAGCCGAAACTGACGTCCAG
Product: short-chain dehydrogenase/oxidoreductase
Products: NA
Alternate protein names: 2,5-DDOL dehydrogenase [H]
Number of amino acids: Translated: 251; Mature: 251
Protein sequence:
>251_residues MFNFTDKVVIVTGARTGIGLSAATLFAKAGAHVILAGHHEPKDEAQQLVDHGYSAVSFKCNVADPKNVAGMVKFAVAQFG HLDYAYNDAGIQSPVTDTADLSVEEYDHVMDTNLKGMFLSMKYELRQMRAQGTPAAIVNCSSMGGLVGIADRTAYHASKH GVLGLTKSSALEYADRNVRINAVCPGIIDTPMVARMDDTERQEMDDLVREIPMGRLAKPEEVAQVVLFLCSDAASYMVGQ AVAVDGGYTIH
Sequences:
>Translated_251_residues MFNFTDKVVIVTGARTGIGLSAATLFAKAGAHVILAGHHEPKDEAQQLVDHGYSAVSFKCNVADPKNVAGMVKFAVAQFG HLDYAYNDAGIQSPVTDTADLSVEEYDHVMDTNLKGMFLSMKYELRQMRAQGTPAAIVNCSSMGGLVGIADRTAYHASKH GVLGLTKSSALEYADRNVRINAVCPGIIDTPMVARMDDTERQEMDDLVREIPMGRLAKPEEVAQVVLFLCSDAASYMVGQ AVAVDGGYTIH >Mature_251_residues MFNFTDKVVIVTGARTGIGLSAATLFAKAGAHVILAGHHEPKDEAQQLVDHGYSAVSFKCNVADPKNVAGMVKFAVAQFG HLDYAYNDAGIQSPVTDTADLSVEEYDHVMDTNLKGMFLSMKYELRQMRAQGTPAAIVNCSSMGGLVGIADRTAYHASKH GVLGLTKSSALEYADRNVRINAVCPGIIDTPMVARMDDTERQEMDDLVREIPMGRLAKPEEVAQVVLFLCSDAASYMVGQ AVAVDGGYTIH
Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ) [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=31.7073170731707, Blast_Score=124, Evalue=5e-29, Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=34.4, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI15277342, Length=148, Percent_Identity=39.8648648648649, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=30.9803921568627, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=29.7959183673469, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=31.6, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=29.7619047619048, Blast_Score=104, Evalue=9e-23, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=30.3964757709251, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=30.2439024390244, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=29.5546558704453, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=30.1587301587302, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=27.3809523809524, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI4503301, Length=250, Percent_Identity=30, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI7705925, Length=240, Percent_Identity=26.25, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4504505, Length=243, Percent_Identity=30.4526748971193, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=30.2325581395349, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI83715985, Length=252, Percent_Identity=26.5873015873016, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=22.8, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI40548397, Length=204, Percent_Identity=27.9411764705882, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI214010158, Length=204, Percent_Identity=27.9411764705882, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI214010156, Length=204, Percent_Identity=27.9411764705882, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI22758144, Length=204, Percent_Identity=27.9411764705882, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4503817, Length=226, Percent_Identity=27.8761061946903, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI20149619, Length=237, Percent_Identity=29.957805907173, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=35.9375, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=32.3886639676113, Blast_Score=138, Evalue=3e-34, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=33.6032388663968, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=32.5301204819277, Blast_Score=133, Evalue=9e-33, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=34.5098039215686, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=31.8548387096774, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787905, Length=258, Percent_Identity=29.4573643410853, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=26.3779527559055, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=28.3464566929134, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=27.710843373494, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=25.8687258687259, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=27.710843373494, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787526, Length=243, Percent_Identity=26.7489711934156, Blast_Score=73, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=38.6178861788618, Blast_Score=153, Evalue=9e-38, Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=35.4838709677419, Blast_Score=137, Evalue=6e-33, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=30.8300395256917, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=30.7116104868914, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=30.9433962264151, Blast_Score=113, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=30.6818181818182, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=30.8300395256917, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=31.0606060606061, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=33.7209302325581, Blast_Score=106, Evalue=9e-24, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=31.9548872180451, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=29.9625468164794, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=29.6992481203008, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=31.5789473684211, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=30.4832713754647, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=33.0739299610895, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=30.0751879699248, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=29.6992481203008, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=31.7343173431734, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=29.277566539924, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=29.7619047619048, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI193204405, Length=269, Percent_Identity=28.996282527881, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=30.1115241635688, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=29.2134831460674, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=29.7397769516729, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=31.7460317460317, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17536025, Length=248, Percent_Identity=32.6612903225806, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=30.6818181818182, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17538182, Length=251, Percent_Identity=25.8964143426295, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17561272, Length=234, Percent_Identity=31.6239316239316, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17564282, Length=196, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=30.2083333333333, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=29.2929292929293, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71982365, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=241, Percent_Identity=28.2157676348548, Blast_Score=83, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=26.6932270916335, Blast_Score=76, Evalue=4e-15, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=35.6, Blast_Score=127, Evalue=7e-30, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=35.4330708661417, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=33.4645669291339, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=35.7723577235772, Blast_Score=121, Evalue=6e-28, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=30.2788844621514, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=35.0393700787402, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=31.3492063492063, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=30.859375, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=29.1338582677165, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI18859837, Length=251, Percent_Identity=30.6772908366534, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21358495, Length=192, Percent_Identity=32.2916666666667, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24641232, Length=240, Percent_Identity=27.0833333333333, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI17647419, Length=231, Percent_Identity=24.6753246753247, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI21357673, Length=190, Percent_Identity=28.4210526315789, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26972; Mature: 26972
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNFTDKVVIVTGARTGIGLSAATLFAKAGAHVILAGHHEPKDEAQQLVDHGYSAVSFKC CCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEE NVADPKNVAGMVKFAVAQFGHLDYAYNDAGIQSPVTDTADLSVEEYDHVMDTNLKGMFLS ECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEH MKYELRQMRAQGTPAAIVNCSSMGGLVGIADRTAYHASKHGVLGLTKSSALEYADRNVRI HHHHHHHHHCCCCCEEEEEECCCCCEEEECCCHHHHCCCCCEEEECHHHHHHHCCCCEEE NAVCPGIIDTPMVARMDDTERQEMDDLVREIPMGRLAKPEEVAQVVLFLCSDAASYMVGQ EEECCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC AVAVDGGYTIH EEEECCCEEEC >Mature Secondary Structure MFNFTDKVVIVTGARTGIGLSAATLFAKAGAHVILAGHHEPKDEAQQLVDHGYSAVSFKC CCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEE NVADPKNVAGMVKFAVAQFGHLDYAYNDAGIQSPVTDTADLSVEEYDHVMDTNLKGMFLS ECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEH MKYELRQMRAQGTPAAIVNCSSMGGLVGIADRTAYHASKHGVLGLTKSSALEYADRNVRI HHHHHHHHHCCCCCEEEEEECCCCCEEEECCCHHHHCCCCCEEEECHHHHHHHCCCCEEE NAVCPGIIDTPMVARMDDTERQEMDDLVREIPMGRLAKPEEVAQVVLFLCSDAASYMVGQ EEECCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC AVAVDGGYTIH EEEECCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7515041; 12450824 [H]