BacMap

Definition	Lactobacillus plantarum WCFS1, complete genome.
Accession	NC_004567
Length	3,308,274

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The map label for this gene is ydfG [C]

Identifier: 28379454

GI number: 28379454

Start: 2692526

End: 2693269

Strand: Direct

Name: ydfG [C]

Synonym: lp_3026

Alternate gene names: 28379454

Gene position: 2692526-2693269 (Clockwise)

Preceding gene: 28379453

Following gene: 28379455

Centisome position: 81.39

GC content: 44.76

Gene sequence:

>744_bases
ATGTCAGTAAAAAACAAAGTTATCGTTATTACAGGAGCCTCATCGGGTATTGGCGAAGCCAGTGCCAAATTGTTAGCCAG
CCATGGTGCCAAAGTTGTTTTAGGTGCACGGCGTGAACAACGCCTACAGAAATTAGCCAATAAAATCCAGCAACAAGGTG
GGCAAGCCACTTACCGCGTAACGGACGTGACTAAGCCTGAAGACTTAACAGCGTTAGTCGCTTTAGCCAAGCGAGAATTT
GGCGGTATTGATGTCATTTTCAATAATGCCGGTATCATGCCGACTTCACCAATCAGTGCACTAAAAACTGATGAATGGAA
TGCCATGATCGATGTGAACTTAAAAGGTGTTTTGAACGGTGTCGCCGCAGTAATGCCTGATTTCACCAATCAAAAGTATG
GTCAAATCATTACGACATCTTCAGTAGCTGGGCTTAAGAGTTTCGCTGGTTCCGGCATCTATGGTGCAACTAAATTTGCA
GTACGCAACTTAATGGAAGTAATCCGCATGGAAAGTGCTCAAGAACACACCAATATTCGGACCACCAGCCTCTATCCGGC
AGCTATCAACACTGAATTATTGCACACCATTACCGATACCAATGCTAAGCAAGGTATGAATAAATTATATGCATCCGTCG
GTATCACCCCAGATGCAGTGGCCCGTGTCGTTGACTTCGCAGTTGCACAACCAGATGACGTCAACGTCAATGAATTTACC
ATTTACCCGACAAAGCAAGGCTAA

Upstream 100 bases:

>100_bases
GAAAAAATCCAGCTTTCCGGTCATGATTTTTCCACAATGGACGTCTTAAATTACCATCACATTTTAAATAAACAAAAAAA
TTAATCAGGAGGAAACAAAT

Downstream 100 bases:

>100_bases
TCGATGACGACAATCCACGATCAATATTAGAAAGAAGCGATTCATGAATGGAACGGTCTATCAATAAAGCGACGATTTAT
CACAGTCTAGTTTTAAGCCT

Product: short-chain dehydrogenase/oxidoreductase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSVKNKVIVITGASSGIGEASAKLLASHGAKVVLGARREQRLQKLANKIQQQGGQATYRVTDVTKPEDLTALVALAKREF
GGIDVIFNNAGIMPTSPISALKTDEWNAMIDVNLKGVLNGVAAVMPDFTNQKYGQIITTSSVAGLKSFAGSGIYGATKFA
VRNLMEVIRMESAQEHTNIRTTSLYPAAINTELLHTITDTNAKQGMNKLYASVGITPDAVARVVDFAVAQPDDVNVNEFT
IYPTKQG

Sequences:

>Translated_247_residues
MSVKNKVIVITGASSGIGEASAKLLASHGAKVVLGARREQRLQKLANKIQQQGGQATYRVTDVTKPEDLTALVALAKREF
GGIDVIFNNAGIMPTSPISALKTDEWNAMIDVNLKGVLNGVAAVMPDFTNQKYGQIITTSSVAGLKSFAGSGIYGATKFA
VRNLMEVIRMESAQEHTNIRTTSLYPAAINTELLHTITDTNAKQGMNKLYASVGITPDAVARVVDFAVAQPDDVNVNEFT
IYPTKQG
>Mature_246_residues
SVKNKVIVITGASSGIGEASAKLLASHGAKVVLGARREQRLQKLANKIQQQGGQATYRVTDVTKPEDLTALVALAKREFG
GIDVIFNNAGIMPTSPISALKTDEWNAMIDVNLKGVLNGVAAVMPDFTNQKYGQIITTSSVAGLKSFAGSGIYGATKFAV
RNLMEVIRMESAQEHTNIRTTSLYPAAINTELLHTITDTNAKQGMNKLYASVGITPDAVARVVDFAVAQPDDVNVNEFTI
YPTKQG

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=27.2, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI5031737, Length=191, Percent_Identity=33.5078534031414, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI32483357, Length=229, Percent_Identity=29.6943231441048, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=33.5078534031414, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI20149619, Length=238, Percent_Identity=30.672268907563, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=31.3186813186813, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=29.7435897435897, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI142976729, Length=191, Percent_Identity=29.8429319371728, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI4504505, Length=197, Percent_Identity=28.9340101522843, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI4758504, Length=215, Percent_Identity=32.5581395348837, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI157739938, Length=212, Percent_Identity=26.4150943396226, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=26.7015706806283, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI40807363, Length=199, Percent_Identity=27.1356783919598, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI83715985, Length=174, Percent_Identity=35.632183908046, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4503817, Length=189, Percent_Identity=28.042328042328, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7657478, Length=248, Percent_Identity=27.0161290322581, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI126723750, Length=196, Percent_Identity=30.1020408163265, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI10190704, Length=189, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI19743808, Length=221, Percent_Identity=26.2443438914027, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI223718074, Length=168, Percent_Identity=30.3571428571429, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI32455239, Length=195, Percent_Identity=28.7179487179487, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI5031765, Length=195, Percent_Identity=28.7179487179487, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI40254992, Length=227, Percent_Identity=25.9911894273128, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI22507405, Length=216, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI40254986, Length=195, Percent_Identity=31.2820512820513, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI150247226, Length=172, Percent_Identity=29.6511627906977, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=28.7128712871287, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI19923817, Length=244, Percent_Identity=26.6393442622951, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI66933014, Length=191, Percent_Identity=31.413612565445, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI38424085, Length=188, Percent_Identity=27.6595744680851, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI38348362, Length=184, Percent_Identity=26.6304347826087, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI310128830, Length=206, Percent_Identity=23.7864077669903, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI310115468, Length=206, Percent_Identity=23.7864077669903, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787820, Length=242, Percent_Identity=28.5123966942149, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082100, Length=193, Percent_Identity=34.1968911917098, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787335, Length=199, Percent_Identity=31.1557788944724, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790717, Length=202, Percent_Identity=29.7029702970297, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787526, Length=219, Percent_Identity=27.3972602739726, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786701, Length=231, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082160, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787905, Length=206, Percent_Identity=27.6699029126214, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786812, Length=201, Percent_Identity=26.865671641791, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789208, Length=241, Percent_Identity=26.5560165975104, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788459, Length=201, Percent_Identity=28.3582089552239, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=234, Percent_Identity=32.9059829059829, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=201, Percent_Identity=29.8507462686567, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=27.6923076923077, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=28.2828282828283, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71997402, Length=256, Percent_Identity=27.34375, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=198, Percent_Identity=28.2828282828283, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17570069, Length=248, Percent_Identity=27.4193548387097, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=27.3684210526316, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=228, Percent_Identity=24.5614035087719, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=256, Percent_Identity=29.296875, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=27.979274611399, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=191, Percent_Identity=27.2251308900524, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=195, Percent_Identity=29.7435897435897, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=244, Percent_Identity=27.8688524590164, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=25.1282051282051, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=197, Percent_Identity=24.8730964467005, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=213, Percent_Identity=26.2910798122066, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=232, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=248, Percent_Identity=27.8225806451613, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=231, Percent_Identity=26.8398268398268, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=145, Percent_Identity=31.0344827586207, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=197, Percent_Identity=28.4263959390863, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=198, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=195, Percent_Identity=27.6923076923077, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=221, Percent_Identity=25.3393665158371, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=248, Percent_Identity=30.6451612903226, Blast_Score=112, Evalue=7e-26,
Organism=Saccharomyces cerevisiae, GI6322861, Length=197, Percent_Identity=34.010152284264, Blast_Score=92, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6322227, Length=227, Percent_Identity=30.8370044052863, Blast_Score=88, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322226, Length=191, Percent_Identity=29.8429319371728, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=172, Percent_Identity=30.8139534883721, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI23397609, Length=197, Percent_Identity=38.5786802030457, Blast_Score=117, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24640492, Length=195, Percent_Identity=34.3589743589744, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24641388, Length=254, Percent_Identity=33.4645669291339, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI281364494, Length=260, Percent_Identity=32.6923076923077, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI28571526, Length=208, Percent_Identity=32.2115384615385, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI281364892, Length=194, Percent_Identity=36.0824742268041, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24663911, Length=254, Percent_Identity=32.2834645669291, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=30.4878048780488, Blast_Score=100, Evalue=6e-22,
Organism=Drosophila melanogaster, GI21355631, Length=184, Percent_Identity=30.9782608695652, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24644339, Length=210, Percent_Identity=30.4761904761905, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=32.6424870466321, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24648693, Length=251, Percent_Identity=29.4820717131474, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI21355889, Length=251, Percent_Identity=29.4820717131474, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI116007236, Length=249, Percent_Identity=29.3172690763052, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21358495, Length=243, Percent_Identity=27.5720164609054, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI116007234, Length=249, Percent_Identity=28.9156626506024, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24648944, Length=254, Percent_Identity=29.1338582677165, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641232, Length=249, Percent_Identity=27.3092369477912, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24643142, Length=194, Percent_Identity=32.4742268041237, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI21355319, Length=229, Percent_Identity=27.9475982532751, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21356301, Length=196, Percent_Identity=33.1632653061224, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI116007238, Length=188, Percent_Identity=30.3191489361702, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17737361, Length=216, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24639444, Length=236, Percent_Identity=27.9661016949153, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21357673, Length=213, Percent_Identity=25.8215962441315, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24584744, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574402, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007232, Length=187, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=28.3582089552239, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649181, Length=208, Percent_Identity=28.3653846153846, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221510726, Length=186, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=29.8429319371728, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=29.8429319371728, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26369; Mature: 26237

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKNKVIVITGASSGIGEASAKLLASHGAKVVLGARREQRLQKLANKIQQQGGQATYRV
CCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEE
TDVTKPEDLTALVALAKREFGGIDVIFNNAGIMPTSPISALKTDEWNAMIDVNLKGVLNG
ECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCCEEEEEEHHHHHHH
VAAVMPDFTNQKYGQIITTSSVAGLKSFAGSGIYGATKFAVRNLMEVIRMESAQEHTNIR
HHHHCCCCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE
TTSLYPAAINTELLHTITDTNAKQGMNKLYASVGITPDAVARVVDFAVAQPDDVNVNEFT
EEEECCCHHCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEE
IYPTKQG
EEECCCC
>Mature Secondary Structure 
SVKNKVIVITGASSGIGEASAKLLASHGAKVVLGARREQRLQKLANKIQQQGGQATYRV
CCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEE
TDVTKPEDLTALVALAKREFGGIDVIFNNAGIMPTSPISALKTDEWNAMIDVNLKGVLNG
ECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCCEEEEEEHHHHHHH
VAAVMPDFTNQKYGQIITTSSVAGLKSFAGSGIYGATKFAVRNLMEVIRMESAQEHTNIR
HHHHCCCCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE
TTSLYPAAINTELLHTITDTNAKQGMNKLYASVGITPDAVARVVDFAVAQPDDVNVNEFT
EEEECCCHHCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEE
IYPTKQG
EEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1905979; 11679669 [H]