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The map label for this gene is 28379435

Identifier: 28379435

GI number: 28379435

Start: 2674803

End: 2675624

Strand: Direct

Name: 28379435

Synonym: lp_3006

Alternate gene names: NA

Gene position: 2674803-2675624 (Clockwise)

Preceding gene: 28379434

Following gene: 28379441

Centisome position: 80.85

GC content: 44.4

Gene sequence:

>822_bases
TTGCAGATTGATAAACAACAAGTTGGTAATCGTATTCACCAACTTCGAATTGCCGCTGGTTTAAGTATGGCCAAACTTGC
ATCTGCGATTGGCTTGGCTGGAAAAAGCACAATTAATGACTGGGAAAAGGGACGTACGCTAGCTAACGCGGACCGACTCG
CTAAAGTAGCTGCATACTTTGACGTATCCACTAATTACCTTTTATACGGTAGTTTGACTGAATATGTCACCGCTGTCTTT
CAAAATGGTGGTCTCAATCATTCAGAATTCAATGTCCTACTATGGGAATATGTGGACCTAACTACGACCAATCCGAACAT
TCTTTCTAGTGACTTGTTCAGTTCGGCCTCACAGACTGAACAGGGCGTATCCGACCCAACTAAAATCGCGGCGGCCTTAA
TTACACCGACTATCAATAATGCGATTCGGCAGATTGTTCCTGAAATCGTCCAACACTACCAACAAACGACAACCTACCCA
GAACCTCAAGCCGTCATTCAGGCCGGTTGCTATGTCTTTCGTCACCGAATACAGATTATTCGGCGGACCTTTACGGGTAA
ATACAACCGGATCGTCCGCTTACTAGACAATGTCGATTTATACGAAAAGTTACAGCCAGACGATGACTTAAAGGCGTACT
TGAATCAAACAACGGGGCCTAAAACTCAAGTTCAAAACGGTTATTCGTTGGATGAAAAGTATCAGCGCCAAATGAACAAA
GTTATCACGGAATTTCACCAAGCACTCAATCGCATCAATGATGCCTACCAAGCTGAACTGATGGCTTGTGGACAAGGACA
GGCTCATTCTGCGGCAGATTGA

Upstream 100 bases:

>100_bases
CGCCAATCATCGAAAGTGCTAATATATTCAGTGTTAACAATGCGAGCGCTTCCCTCCCTATGTTAGAATATACTAAGAAC
CAATCAGGGGGGAAATCAAA

Downstream 100 bases:

>100_bases
ATTGCTTGCAACCGCCAATCAAAAATCAACTGAACACGAAAACACACTTCAAAAGTAGCAGCTTTGAAGTGTGTTTTCGT
ATTTAACAACTGCATTGCAA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MQIDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYFDVSTNYLLYGSLTEYVTAVF
QNGGLNHSEFNVLLWEYVDLTTTNPNILSSDLFSSASQTEQGVSDPTKIAAALITPTINNAIRQIVPEIVQHYQQTTTYP
EPQAVIQAGCYVFRHRIQIIRRTFTGKYNRIVRLLDNVDLYEKLQPDDDLKAYLNQTTGPKTQVQNGYSLDEKYQRQMNK
VITEFHQALNRINDAYQAELMACGQGQAHSAAD

Sequences:

>Translated_273_residues
MQIDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYFDVSTNYLLYGSLTEYVTAVF
QNGGLNHSEFNVLLWEYVDLTTTNPNILSSDLFSSASQTEQGVSDPTKIAAALITPTINNAIRQIVPEIVQHYQQTTTYP
EPQAVIQAGCYVFRHRIQIIRRTFTGKYNRIVRLLDNVDLYEKLQPDDDLKAYLNQTTGPKTQVQNGYSLDEKYQRQMNK
VITEFHQALNRINDAYQAELMACGQGQAHSAAD
>Mature_273_residues
MQIDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYFDVSTNYLLYGSLTEYVTAVF
QNGGLNHSEFNVLLWEYVDLTTTNPNILSSDLFSSASQTEQGVSDPTKIAAALITPTINNAIRQIVPEIVQHYQQTTTYP
EPQAVIQAGCYVFRHRIQIIRRTFTGKYNRIVRLLDNVDLYEKLQPDDDLKAYLNQTTGPKTQVQNGYSLDEKYQRQMNK
VITEFHQALNRINDAYQAELMACGQGQAHSAAD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30563; Mature: 30563

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYF
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHH
DVSTNYLLYGSLTEYVTAVFQNGGLNHSEFNVLLWEYVDLTTTNPNILSSDLFSSASQTE
CCCCCEEEECCHHHHHHHHHHCCCCCCHHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHH
QGVSDPTKIAAALITPTINNAIRQIVPEIVQHYQQTTTYPEPQAVIQAGCYVFRHRIQII
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
RRTFTGKYNRIVRLLDNVDLYEKLQPDDDLKAYLNQTTGPKTQVQNGYSLDEKYQRQMNK
HHHHCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHH
VITEFHQALNRINDAYQAELMACGQGQAHSAAD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQIDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYF
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHH
DVSTNYLLYGSLTEYVTAVFQNGGLNHSEFNVLLWEYVDLTTTNPNILSSDLFSSASQTE
CCCCCEEEECCHHHHHHHHHHCCCCCCHHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHH
QGVSDPTKIAAALITPTINNAIRQIVPEIVQHYQQTTTYPEPQAVIQAGCYVFRHRIQII
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
RRTFTGKYNRIVRLLDNVDLYEKLQPDDDLKAYLNQTTGPKTQVQNGYSLDEKYQRQMNK
HHHHCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHH
VITEFHQALNRINDAYQAELMACGQGQAHSAAD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA