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The map label for this gene is yfnB [H]

Identifier: 28379344

GI number: 28379344

Start: 2562286

End: 2562969

Strand: Direct

Name: yfnB [H]

Synonym: lp_2879

Alternate gene names: 28379344

Gene position: 2562286-2562969 (Clockwise)

Preceding gene: 28379330

Following gene: 28379356

Centisome position: 77.45

GC content: 47.81

Gene sequence:

>684_bases
ATGCAATACGCAATTTTTGATCTCGATAATACCATCCTTGACTTTGACCGCGCTGAAGCGGCTAACCTCGCAGCCGTCTT
TCAGCATCATGGCGTCACTGATATTCGCCGTGCAGAAAATGAGTATCAGGCCTATAACGAAACTGTTTGGCAACAAATCG
AACAAGGTGCCGATCGTGATAGCTTGTTAGACCAACGATTTCAAGTCTTTCTAGGCACACTGGGCATCACCGTTGACGGT
CCTGCGGTTCAACAAGAATACGACCAATTATTAGCGCACAGTTATCAGGTAATTCCCGGCGCCCACGAACTTTTGCGCAC
GCTGACCAACGCTGGGCTGACCTTACTCGTCGGCACTAACGGTATCAAACACACCCAGCTCAGTCGCTTGGCAGGTGCCC
ATATGACGCCCTATTTTGATCATATCTTCATCTCTGAAAGTATCGGCTATGCCAAGCCGAACCCACACTTTTTCAACGCT
ATTCATGACCAATACCCAGACATGAATGCCACGAATACCGTCATGATTGGTGATAGCCTGCGTTCAGACATCGCGGGAGC
GGCCACCGTCCAGTTACCTAGTATCTGGTACAATCCACAGCATGTGCATAACGACACAACAATTGCCCCAACTTACACTG
TGGATAACTTTAAGCAACTGCAAAAACTGTTATTAACAGCTTAA

Upstream 100 bases:

>100_bases
CCATGTTTAACTTCCTTTTAAGTATGATACTTTAAGCATACCACACCATTCAAAATTGCTGTATGATGGTTTAAATAAAC
CTATTGAAAGTAGTGGTTCC

Downstream 100 bases:

>100_bases
ACGCAAAAACGATCAGTAAACTCTGCGCGCAGGCCTAACATGTCTTAAAAACTGAACTATTTAACATATTAGGTAACATA
TTAGGTAACATATTAGGTAC

Product: HAD superfamily hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MQYAIFDLDNTILDFDRAEAANLAAVFQHHGVTDIRRAENEYQAYNETVWQQIEQGADRDSLLDQRFQVFLGTLGITVDG
PAVQQEYDQLLAHSYQVIPGAHELLRTLTNAGLTLLVGTNGIKHTQLSRLAGAHMTPYFDHIFISESIGYAKPNPHFFNA
IHDQYPDMNATNTVMIGDSLRSDIAGAATVQLPSIWYNPQHVHNDTTIAPTYTVDNFKQLQKLLLTA

Sequences:

>Translated_227_residues
MQYAIFDLDNTILDFDRAEAANLAAVFQHHGVTDIRRAENEYQAYNETVWQQIEQGADRDSLLDQRFQVFLGTLGITVDG
PAVQQEYDQLLAHSYQVIPGAHELLRTLTNAGLTLLVGTNGIKHTQLSRLAGAHMTPYFDHIFISESIGYAKPNPHFFNA
IHDQYPDMNATNTVMIGDSLRSDIAGAATVQLPSIWYNPQHVHNDTTIAPTYTVDNFKQLQKLLLTA
>Mature_227_residues
MQYAIFDLDNTILDFDRAEAANLAAVFQHHGVTDIRRAENEYQAYNETVWQQIEQGADRDSLLDQRFQVFLGTLGITVDG
PAVQQEYDQLLAHSYQVIPGAHELLRTLTNAGLTLLVGTNGIKHTQLSRLAGAHMTPYFDHIFISESIGYAKPNPHFFNA
IHDQYPDMNATNTVMIGDSLRSDIAGAATVQLPSIWYNPQHVHNDTTIAPTYTVDNFKQLQKLLLTA

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. YjjG family [H]

Homologues:

Organism=Escherichia coli, GI1790833, Length=225, Percent_Identity=30.6666666666667, Blast_Score=100, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439
- InterPro:   IPR011951 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 25427; Mature: 25427

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYAIFDLDNTILDFDRAEAANLAAVFQHHGVTDIRRAENEYQAYNETVWQQIEQGADRD
CCEEEEECCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
SLLDQRFQVFLGTLGITVDGPAVQQEYDQLLAHSYQVIPGAHELLRTLTNAGLTLLVGTN
HHHHHHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECC
GIKHTQLSRLAGAHMTPYFDHIFISESIGYAKPNPHFFNAIHDQYPDMNATNTVMIGDSL
CCCHHHHHHHHCCCCCCHHHHEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCHH
RSDIAGAATVQLPSIWYNPQHVHNDTTIAPTYTVDNFKQLQKLLLTA
HHHHCCCEEEECCCEECCCCCCCCCCEECCEEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MQYAIFDLDNTILDFDRAEAANLAAVFQHHGVTDIRRAENEYQAYNETVWQQIEQGADRD
CCEEEEECCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
SLLDQRFQVFLGTLGITVDGPAVQQEYDQLLAHSYQVIPGAHELLRTLTNAGLTLLVGTN
HHHHHHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECC
GIKHTQLSRLAGAHMTPYFDHIFISESIGYAKPNPHFFNAIHDQYPDMNATNTVMIGDSL
CCCHHHHHHHHCCCCCCHHHHEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCHH
RSDIAGAATVQLPSIWYNPQHVHNDTTIAPTYTVDNFKQLQKLLLTA
HHHHCCCEEEECCCEECCCCCCCCCCEECCEEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]