Click here to switch to the map view.

The map label for this gene is ybhD [C]

Identifier: 28379286

GI number: 28379286

Start: 2497327

End: 2498226

Strand: Direct

Name: ybhD [C]

Synonym: lp_2804

Alternate gene names: 28379286

Gene position: 2497327-2498226 (Clockwise)

Preceding gene: 28379283

Following gene: 28379292

Centisome position: 75.49

GC content: 46.33

Gene sequence:

>900_bases
ATGATTGAAAATTATTTATTAGAAGAGCTGATCACATTCGCCCACGAGCACACGCTGGCTAAGACCGCGGCCGCATTAAA
CGTGACGCAACCAACTATCACTCGCGGCATGCAGAAATTGGAAACAATGCTCGCTGTTCGCTTATTTGATCGTCAACCCA
ATCGAATTACACTGACGCCCACTGGCCAGTTAGCCGCTCAGGAAGCTGAACAATTATTGACACAACGACGGACTTTTGTA
ACCAAAATACAAAACTACGAGCAAAGCTTAGTCACACGTACCGTCGAAACCACCCTACCTGGTCCACTTGCCTTACTCAC
CCATCTCAAAACGGTATTACCTAATTCGCTGCGAGTAAGGCAACCACTGATTGCCGACGACCAAATCACTGAGCATCTCA
TTAACCGCCAGGCAAGTTTCATTTTCTCTAATCAGGAAATTCTGACGGCCGGCATTGAATCTCGCTTCATCGGTACTGAA
AATCTCGTGGTCCATTTACAGCGATTCATGTACCGTGCGAACCAACCTAGCATCACGTTCGCCGAACTTAAGGGAATTAG
CTTCGTGGTTCTAAGCGCAATCGGTATTTGGAAAGATATTATTCAGCAGGCCATCCCAGATGCTAAATTCTTATACCAAC
CCCAACGCACGGCCTTTACAGAAATCACTAAATACTCTGATTTTCCGTACTTCAGTACTAACTTTACCGCATTGGCGCCT
CACCAGCTGGATAGCCAAGCCGATGATGACAATCGAGTCGCTATCCCGATTAGCGATACTCGTGCTCACATGCCAATCTA
TGTCAATTATCTTGTTAGCAATCGACAATCATTAATGCCCCTATTCAAGCAATTTGAAGCCGCGTGGCCAGCCAATCTCA
AGCATACTTCCACGTCCTAG

Upstream 100 bases:

>100_bases
TTGATTACAATAACAAGCATACCCGCAAACCTAATACTTGAAAATTACTACTTATTCATACTAGTATACATATAGTGCAT
ACTAGTAACGGAGGTTCCTG

Downstream 100 bases:

>100_bases
CAGCTAACATAATTAAGCCGTTCGGTCTAAAACTGCAAAATGAAGTGTTACGCTCAATCACAGGGGGTATATACTGGTTG
AAGCTCGCCCTCCCAGTTCT

Product: transcription regulator

Products: NA

Alternate protein names: Transcription Regulator; Transcriptional Regulator LysR Family; LysR Family Transcriptional Regulator; Transcription Regulator LysR Family

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MIENYLLEELITFAHEHTLAKTAAALNVTQPTITRGMQKLETMLAVRLFDRQPNRITLTPTGQLAAQEAEQLLTQRRTFV
TKIQNYEQSLVTRTVETTLPGPLALLTHLKTVLPNSLRVRQPLIADDQITEHLINRQASFIFSNQEILTAGIESRFIGTE
NLVVHLQRFMYRANQPSITFAELKGISFVVLSAIGIWKDIIQQAIPDAKFLYQPQRTAFTEITKYSDFPYFSTNFTALAP
HQLDSQADDDNRVAIPISDTRAHMPIYVNYLVSNRQSLMPLFKQFEAAWPANLKHTSTS

Sequences:

>Translated_299_residues
MIENYLLEELITFAHEHTLAKTAAALNVTQPTITRGMQKLETMLAVRLFDRQPNRITLTPTGQLAAQEAEQLLTQRRTFV
TKIQNYEQSLVTRTVETTLPGPLALLTHLKTVLPNSLRVRQPLIADDQITEHLINRQASFIFSNQEILTAGIESRFIGTE
NLVVHLQRFMYRANQPSITFAELKGISFVVLSAIGIWKDIIQQAIPDAKFLYQPQRTAFTEITKYSDFPYFSTNFTALAP
HQLDSQADDDNRVAIPISDTRAHMPIYVNYLVSNRQSLMPLFKQFEAAWPANLKHTSTS
>Mature_299_residues
MIENYLLEELITFAHEHTLAKTAAALNVTQPTITRGMQKLETMLAVRLFDRQPNRITLTPTGQLAAQEAEQLLTQRRTFV
TKIQNYEQSLVTRTVETTLPGPLALLTHLKTVLPNSLRVRQPLIADDQITEHLINRQASFIFSNQEILTAGIESRFIGTE
NLVVHLQRFMYRANQPSITFAELKGISFVVLSAIGIWKDIIQQAIPDAKFLYQPQRTAFTEITKYSDFPYFSTNFTALAP
HQLDSQADDDNRVAIPISDTRAHMPIYVNYLVSNRQSLMPLFKQFEAAWPANLKHTSTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33986; Mature: 33986

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENYLLEELITFAHEHTLAKTAAALNVTQPTITRGMQKLETMLAVRLFDRQPNRITLTP
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
TGQLAAQEAEQLLTQRRTFVTKIQNYEQSLVTRTVETTLPGPLALLTHLKTVLPNSLRVR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHC
QPLIADDQITEHLINRQASFIFSNQEILTAGIESRFIGTENLVVHLQRFMYRANQPSITF
CCCCCCHHHHHHHHHHHHHEEECCCHHEECCHHHHCCCHHHHHHHHHHHHHHCCCCCEEH
AELKGISFVVLSAIGIWKDIIQQAIPDAKFLYQPQRTAFTEITKYSDFPYFSTNFTALAP
HHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEECC
HQLDSQADDDNRVAIPISDTRAHMPIYVNYLVSNRQSLMPLFKQFEAAWPANLKHTSTS
CCCCCCCCCCCEEEEEECCCCCCCCEEEEEHHHCHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIENYLLEELITFAHEHTLAKTAAALNVTQPTITRGMQKLETMLAVRLFDRQPNRITLTP
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
TGQLAAQEAEQLLTQRRTFVTKIQNYEQSLVTRTVETTLPGPLALLTHLKTVLPNSLRVR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHC
QPLIADDQITEHLINRQASFIFSNQEILTAGIESRFIGTENLVVHLQRFMYRANQPSITF
CCCCCCHHHHHHHHHHHHHEEECCCHHEECCHHHHCCCHHHHHHHHHHHHHHCCCCCEEH
AELKGISFVVLSAIGIWKDIIQQAIPDAKFLYQPQRTAFTEITKYSDFPYFSTNFTALAP
HHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEECC
HQLDSQADDDNRVAIPISDTRAHMPIYVNYLVSNRQSLMPLFKQFEAAWPANLKHTSTS
CCCCCCCCCCCEEEEEECCCCCCCCEEEEEHHHCHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA