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The map label for this gene is ydeD [H]

Identifier: 28379273

GI number: 28379273

Start: 2478973

End: 2479899

Strand: Direct

Name: ydeD [H]

Synonym: lp_2789

Alternate gene names: 28379273

Gene position: 2478973-2479899 (Clockwise)

Preceding gene: 28379272

Following gene: 28379277

Centisome position: 74.93

GC content: 47.9

Gene sequence:

>927_bases
GTGCAAGTCAGTCGGGAATTCAAAGGTATCTTTCTTGCTAGTATCAGTGCGACCTTCTGGGGGATTTCCGGAGCCGTCGC
ACAAACACTTTTTGATACGACCGATATTAATTCTATTTGGTTAACGGGAATTCGCATGCTGGGTGCCGGAATCGCACTAT
TACTGGTCAGTTTGCTGACCCATGTTGATTTGTGGTCGATTTGGCGTCAACCCCGCGATCTCCTACAGATCGTGGCCTAC
ACACTATTGGGTCTAATGCCGGTTCAGTTCACCTACTTTTTAGCAGTTGAAGCTAGTAACGCGGCGACCGGAACAATTCT
ACAATTCATGGGACCCGTGTTCATTGCTCTGTGGATGCTAGTCGCTCATCGGCAATTGCCGACCCGTGCAGAAGGCCTTG
CAATTATTTGTGCACTACTGGGCTCATTCTTGCTCGTGACTCACGGCAACCCTCAGACCCTAGTCATCTCCGTCTGGGCG
TTGATCTGGGGACTCTTATCGGGGGTCTCGTCCGCTACGAATACCTTGCTACCAACCAAACTACTTACTAAGTACGACCC
AATGACCGTCAACACCTGGTCAATGTTGTTAGGGGGTATCTTGTTTAACATCGTTCAGCCAGTCTGGTCAATCCATATTC
CACTGACTATGCTTAATATCAGCAAGTTGACCTTTGTTGTGCTGTTTGGAACATTGTTAGCTTTCCTATTCTTCTTGCAA
AGTTTGCAATATATCCGGCCAACCGTTGTCAGTCTACTAGACGCTTTTGAACCTTTATCCGCAACCATCATTGCGGTGGT
TCTACTCGGTGTCAGCTTCGGTTGGCTCGACATTCTGGGCAGTGTCCTGATTATTAGTACCGTCTTTATTTTGGCTATTG
GGCAGGGTCCCAATGATCGCACGGCAGAGAATTTCAAGCAACCATAA

Upstream 100 bases:

>100_bases
ACAGGCTAGTCAACAAGCAAGTGCGTAACCGATTCCCCTTTTCTCAGCAAAATCATGTACAATGGAGGTTAAGTTGATTT
TACTGAGGAGGCGGTTTGCT

Downstream 100 bases:

>100_bases
ACGATGACTCATAATTATGAAACCAGTAAAAGCCGGTTGTGACTAAGTCCTAGTCACAACCGGCTTTTACATTGCCGCTA
CCGTTACATATATTCAATTA

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MQVSREFKGIFLASISATFWGISGAVAQTLFDTTDINSIWLTGIRMLGAGIALLLVSLLTHVDLWSIWRQPRDLLQIVAY
TLLGLMPVQFTYFLAVEASNAATGTILQFMGPVFIALWMLVAHRQLPTRAEGLAIICALLGSFLLVTHGNPQTLVISVWA
LIWGLLSGVSSATNTLLPTKLLTKYDPMTVNTWSMLLGGILFNIVQPVWSIHIPLTMLNISKLTFVVLFGTLLAFLFFLQ
SLQYIRPTVVSLLDAFEPLSATIIAVVLLGVSFGWLDILGSVLIISTVFILAIGQGPNDRTAENFKQP

Sequences:

>Translated_308_residues
MQVSREFKGIFLASISATFWGISGAVAQTLFDTTDINSIWLTGIRMLGAGIALLLVSLLTHVDLWSIWRQPRDLLQIVAY
TLLGLMPVQFTYFLAVEASNAATGTILQFMGPVFIALWMLVAHRQLPTRAEGLAIICALLGSFLLVTHGNPQTLVISVWA
LIWGLLSGVSSATNTLLPTKLLTKYDPMTVNTWSMLLGGILFNIVQPVWSIHIPLTMLNISKLTFVVLFGTLLAFLFFLQ
SLQYIRPTVVSLLDAFEPLSATIIAVVLLGVSFGWLDILGSVLIISTVFILAIGQGPNDRTAENFKQP
>Mature_308_residues
MQVSREFKGIFLASISATFWGISGAVAQTLFDTTDINSIWLTGIRMLGAGIALLLVSLLTHVDLWSIWRQPRDLLQIVAY
TLLGLMPVQFTYFLAVEASNAATGTILQFMGPVFIALWMLVAHRQLPTRAEGLAIICALLGSFLLVTHGNPQTLVISVWA
LIWGLLSGVSSATNTLLPTKLLTKYDPMTVNTWSMLLGGILFNIVQPVWSIHIPLTMLNISKLTFVVLFGTLLAFLFFLQ
SLQYIRPTVVSLLDAFEPLSATIIAVVLLGVSFGWLDILGSVLIISTVFILAIGQGPNDRTAENFKQP

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=304, Percent_Identity=34.8684210526316, Blast_Score=162, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33706; Mature: 33706

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVSREFKGIFLASISATFWGISGAVAQTLFDTTDINSIWLTGIRMLGAGIALLLVSLLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
HVDLWSIWRQPRDLLQIVAYTLLGLMPVQFTYFLAVEASNAATGTILQFMGPVFIALWML
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHH
VAHRQLPTRAEGLAIICALLGSFLLVTHGNPQTLVISVWALIWGLLSGVSSATNTLLPTK
HHHHCCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLTKYDPMTVNTWSMLLGGILFNIVQPVWSIHIPLTMLNISKLTFVVLFGTLLAFLFFLQ
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLQYIRPTVVSLLDAFEPLSATIIAVVLLGVSFGWLDILGSVLIISTVFILAIGQGPNDR
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TAENFKQP
CCHHCCCC
>Mature Secondary Structure
MQVSREFKGIFLASISATFWGISGAVAQTLFDTTDINSIWLTGIRMLGAGIALLLVSLLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
HVDLWSIWRQPRDLLQIVAYTLLGLMPVQFTYFLAVEASNAATGTILQFMGPVFIALWML
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHH
VAHRQLPTRAEGLAIICALLGSFLLVTHGNPQTLVISVWALIWGLLSGVSSATNTLLPTK
HHHHCCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLTKYDPMTVNTWSMLLGGILFNIVQPVWSIHIPLTMLNISKLTFVVLFGTLLAFLFFLQ
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLQYIRPTVVSLLDAFEPLSATIIAVVLLGVSFGWLDILGSVLIISTVFILAIGQGPNDR
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TAENFKQP
CCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]