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The map label for this gene is yciT [H]

Identifier: 28379124

GI number: 28379124

Start: 2314887

End: 2315642

Strand: Direct

Name: yciT [H]

Synonym: lp_2597

Alternate gene names: 28379124

Gene position: 2314887-2315642 (Clockwise)

Preceding gene: 28379120

Following gene: 28379125

Centisome position: 69.97

GC content: 38.49

Gene sequence:

>756_bases
ATGAATCAACGCAATGAACAATTATTAGAAATCGTCAATCAACGAAAAAAAGTCGAAGTGAATGAGTTAGCAAGCTTACT
TGAGGTCTCAAAAGTGACTATCCGTAAGGACCTTACTGAATTAGAAAATCGTGGTCTATTGCAACGGCAACATGGTTTTG
CAATTATTAATAATCCAAACAATCTGAACTTTCGACTTGCTCAAAATTACGACATTAAACATAAAATTGCGGAAGCCGCC
GCAACTCTAGTTCAAGATAATGAGACCATCATGATCGAATCAGGATCAACTTGTGCACTTTTAGCCGAAGAACTAGGAAA
AAGTGGGAAACACGTGACAATTATTACAATTTCATTTTTCATCGCTAATTACGTACGTAACTACGACAATATTACAGTCT
ACACTTTAGGCGGACAATACCAATCCGATGCCCAAGTGGCAGTTGGACCACTAACAAAAACGATGCTAGCTAACTTTCAC
ACCGAAAAGCTTTTTTTAGGTATTGACGGTTTCGATCGTAACTACGGCTTTTATGGTAATGATATTATGCGCACTGATAC
GGTCCATGCCATGGCTGATAACGCCGACAAGACTTGTATCTTAACAGATTCAAGTAAATTTGAATTAACCAGTACTGTTC
ACCAATTGCCATTCCAGCAAGTTGATACAGTGATTACCGACAACCAGCTTTCAAAAGAGGCTCATCGCGTACTCAATTTT
CAACAAATCAAAGTCCAGACTGTTGCGACTCATTAA

Upstream 100 bases:

>100_bases
TAACACCAATCACATTAAACGTAAATGCTTTTAATTTCAAACGAAAGTAATTTCAATCAAATAAAATGTTATAATCATTA
AAGCAAGGAAGTGAAAATCT

Downstream 100 bases:

>100_bases
GCAAATTGTCGCAATGACCGAAGCGACTCAAACCGCAAACTTATTGCTGCTACCCCCATCGACTTCGATGAGGGTTTTTC
GATACGCACTTCTTTAATTC

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MNQRNEQLLEIVNQRKKVEVNELASLLEVSKVTIRKDLTELENRGLLQRQHGFAIINNPNNLNFRLAQNYDIKHKIAEAA
ATLVQDNETIMIESGSTCALLAEELGKSGKHVTIITISFFIANYVRNYDNITVYTLGGQYQSDAQVAVGPLTKTMLANFH
TEKLFLGIDGFDRNYGFYGNDIMRTDTVHAMADNADKTCILTDSSKFELTSTVHQLPFQQVDTVITDNQLSKEAHRVLNF
QQIKVQTVATH

Sequences:

>Translated_251_residues
MNQRNEQLLEIVNQRKKVEVNELASLLEVSKVTIRKDLTELENRGLLQRQHGFAIINNPNNLNFRLAQNYDIKHKIAEAA
ATLVQDNETIMIESGSTCALLAEELGKSGKHVTIITISFFIANYVRNYDNITVYTLGGQYQSDAQVAVGPLTKTMLANFH
TEKLFLGIDGFDRNYGFYGNDIMRTDTVHAMADNADKTCILTDSSKFELTSTVHQLPFQQVDTVITDNQLSKEAHRVLNF
QQIKVQTVATH
>Mature_251_residues
MNQRNEQLLEIVNQRKKVEVNELASLLEVSKVTIRKDLTELENRGLLQRQHGFAIINNPNNLNFRLAQNYDIKHKIAEAA
ATLVQDNETIMIESGSTCALLAEELGKSGKHVTIITISFFIANYVRNYDNITVYTLGGQYQSDAQVAVGPLTKTMLANFH
TEKLFLGIDGFDRNYGFYGNDIMRTDTVHAMADNADKTCILTDSSKFELTSTVHQLPFQQVDTVITDNQLSKEAHRVLNF
QQIKVQTVATH

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=230, Percent_Identity=42.6086956521739, Blast_Score=184, Evalue=5e-48,
Organism=Escherichia coli, GI1789519, Length=243, Percent_Identity=29.2181069958848, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1789059, Length=247, Percent_Identity=29.9595141700405, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1790635, Length=257, Percent_Identity=30.3501945525292, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082344, Length=231, Percent_Identity=28.1385281385281, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI226510968, Length=250, Percent_Identity=26.4, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788069, Length=236, Percent_Identity=28.3898305084746, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789829, Length=249, Percent_Identity=27.3092369477912, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789170, Length=232, Percent_Identity=22.8448275862069, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790753, Length=237, Percent_Identity=21.9409282700422, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28305; Mature: 28305

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQRNEQLLEIVNQRKKVEVNELASLLEVSKVTIRKDLTELENRGLLQRQHGFAIINNPN
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCC
NLNFRLAQNYDIKHKIAEAAATLVQDNETIMIESGSTCALLAEELGKSGKHVTIITISFF
CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEEHHHH
IANYVRNYDNITVYTLGGQYQSDAQVAVGPLTKTMLANFHTEKLFLGIDGFDRNYGFYGN
HHHHHHCCCCEEEEEECCCCCCCCEEEECHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC
DIMRTDTVHAMADNADKTCILTDSSKFELTSTVHQLPFQQVDTVITDNQLSKEAHRVLNF
CEEECCHHHEECCCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCC
QQIKVQTVATH
EEEEEEEEECC
>Mature Secondary Structure
MNQRNEQLLEIVNQRKKVEVNELASLLEVSKVTIRKDLTELENRGLLQRQHGFAIINNPN
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCC
NLNFRLAQNYDIKHKIAEAAATLVQDNETIMIESGSTCALLAEELGKSGKHVTIITISFF
CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEEHHHH
IANYVRNYDNITVYTLGGQYQSDAQVAVGPLTKTMLANFHTEKLFLGIDGFDRNYGFYGN
HHHHHHCCCCEEEEEECCCCCCCCEEEECHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC
DIMRTDTVHAMADNADKTCILTDSSKFELTSTVHQLPFQQVDTVITDNQLSKEAHRVLNF
CEEECCHHHEECCCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCC
QQIKVQTVATH
EEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]