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The map label for this gene is yhcJ [H]

Identifier: 28378426

GI number: 28378426

Start: 1583981

End: 1584838

Strand: Direct

Name: yhcJ [H]

Synonym: lp_1746

Alternate gene names: 28378426

Gene position: 1583981-1584838 (Clockwise)

Preceding gene: 28378425

Following gene: 28378427

Centisome position: 47.88

GC content: 41.84

Gene sequence:

>858_bases
ATGAAACGATTAGCATGGTGGTTGATTGGTATTGCTGCAATTGTTGGTATTTGTGTGGGATTACATGAAATAACGAGTTA
TTCGGCCCGTACACAACAGAGTGCCACGATTACGGTCGGATCAATGGGATCGGACTATGAAGTCTGGCAGCACATTGCTA
AAAGCCAAGATGCCAAAAAGATGGGCTTAACGATTAAGGTTAAACAAATCACGGATGGTGTTCAGCTGAACAAGGCCACG
GCGGACGGTAACGTTGATGTGAACGCCTTTCAGTCCTGGTCATATTACCAAACTTATAATCAGCAGAATCCCAAGGCCAA
GTTGGCGGCGTTAGGAACGACTTATTTGGAACCAATGGGAATCTACTCCAAAAAATATCAAAGCGTTGATGAAATTCCGG
ATGGCGCTACGATTGCAATTGCTGACAATCCCTCACAAGCTTCGCGAGGCTTGTTACTGCTCCAAAAAGCGGGCCTGATC
AAACTGGCAGCTAATTTTGGTGTCTTAGGTTCAGTGAAGGATATTACAAGCAATCCCCGTCATCTGAAATTCAAACAGAT
CGATGATACTACTGGTCCCCGGATCATTAAAAGTGTCGATGCAGTTTTGATTTCGAATACGGTTGCTTTGGAAGGACATT
TACACGTTTTACGGGATTCGATTTTCCACGAAAGTCTGAATAAGAGTACTAGGGATAATGTTAATATCTTAGCAACGGCC
GCTAAGAACGAGCATCGTGCTAGTTATCTTAAACTAGTTAAACTTTACCATCGGGCGGATATTCAAAAGTATATCAAGCA
AAAATATTACGGTACTAAGATTAACATCAATAAACCGCTATCTTATTTTGACAATTAA

Upstream 100 bases:

>100_bases
CGCAATGATCATCATTTTGATCTTAGTCTTTGCTATACAGCTGTTTGGTGATTGGCTCGTTAAGAGCGTCACACATCATT
AATAAAGGGGGAATTAGCCG

Downstream 100 bases:

>100_bases
TAAGCATATTGGGTGCTGGATGATTATAGATAAGTTATGATTATGATAATAAATGTTGTAACTCATTGAACTTATCAGGA
GGTCTCAACCATGTATAAAC

Product: amino acid ABC transporter, substrate binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKRLAWWLIGIAAIVGICVGLHEITSYSARTQQSATITVGSMGSDYEVWQHIAKSQDAKKMGLTIKVKQITDGVQLNKAT
ADGNVDVNAFQSWSYYQTYNQQNPKAKLAALGTTYLEPMGIYSKKYQSVDEIPDGATIAIADNPSQASRGLLLLQKAGLI
KLAANFGVLGSVKDITSNPRHLKFKQIDDTTGPRIIKSVDAVLISNTVALEGHLHVLRDSIFHESLNKSTRDNVNILATA
AKNEHRASYLKLVKLYHRADIQKYIKQKYYGTKININKPLSYFDN

Sequences:

>Translated_285_residues
MKRLAWWLIGIAAIVGICVGLHEITSYSARTQQSATITVGSMGSDYEVWQHIAKSQDAKKMGLTIKVKQITDGVQLNKAT
ADGNVDVNAFQSWSYYQTYNQQNPKAKLAALGTTYLEPMGIYSKKYQSVDEIPDGATIAIADNPSQASRGLLLLQKAGLI
KLAANFGVLGSVKDITSNPRHLKFKQIDDTTGPRIIKSVDAVLISNTVALEGHLHVLRDSIFHESLNKSTRDNVNILATA
AKNEHRASYLKLVKLYHRADIQKYIKQKYYGTKININKPLSYFDN
>Mature_285_residues
MKRLAWWLIGIAAIVGICVGLHEITSYSARTQQSATITVGSMGSDYEVWQHIAKSQDAKKMGLTIKVKQITDGVQLNKAT
ADGNVDVNAFQSWSYYQTYNQQNPKAKLAALGTTYLEPMGIYSKKYQSVDEIPDGATIAIADNPSQASRGLLLLQKAGLI
KLAANFGVLGSVKDITSNPRHLKFKQIDDTTGPRIIKSVDAVLISNTVALEGHLHVLRDSIFHESLNKSTRDNVNILATA
AKNEHRASYLKLVKLYHRADIQKYIKQKYYGTKININKPLSYFDN

Specific function: Unknown

COG id: COG1464

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface antigen

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpA lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1790093, Length=240, Percent_Identity=32.5, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1786396, Length=242, Percent_Identity=32.6446280991736, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004872 [H]

Pfam domain/function: PF03180 Lipoprotein_9 [H]

EC number: NA

Molecular weight: Translated: 31599; Mature: 31599

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS00442 GATASE_TYPE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLAWWLIGIAAIVGICVGLHEITSYSARTQQSATITVGSMGSDYEVWQHIAKSQDAKK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCHHH
MGLTIKVKQITDGVQLNKATADGNVDVNAFQSWSYYQTYNQQNPKAKLAALGTTYLEPMG
HCCEEEEEECCCCEEEEEECCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCC
IYSKKYQSVDEIPDGATIAIADNPSQASRGLLLLQKAGLIKLAANFGVLGSVKDITSNPR
HHHHHHHHHHHCCCCCEEEEECCCCCHHCCEEEEECCCEEEEECCCCCCCCHHHHCCCCC
HLKFKQIDDTTGPRIIKSVDAVLISNTVALEGHLHVLRDSIFHESLNKSTRDNVNILATA
EEEEEECCCCCCHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
AKNEHRASYLKLVKLYHRADIQKYIKQKYYGTKININKPLSYFDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHCCC
>Mature Secondary Structure
MKRLAWWLIGIAAIVGICVGLHEITSYSARTQQSATITVGSMGSDYEVWQHIAKSQDAKK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCHHH
MGLTIKVKQITDGVQLNKATADGNVDVNAFQSWSYYQTYNQQNPKAKLAALGTTYLEPMG
HCCEEEEEECCCCEEEEEECCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCC
IYSKKYQSVDEIPDGATIAIADNPSQASRGLLLLQKAGLIKLAANFGVLGSVKDITSNPR
HHHHHHHHHHHCCCCCEEEEECCCCCHHCCEEEEECCCEEEEECCCCCCCCHHHHCCCCC
HLKFKQIDDTTGPRIIKSVDAVLISNTVALEGHLHVLRDSIFHESLNKSTRDNVNILATA
EEEEEECCCCCCHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
AKNEHRASYLKLVKLYHRADIQKYIKQKYYGTKININKPLSYFDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]