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The map label for this gene is dnaD [H]

Identifier: 28378422

GI number: 28378422

Start: 1580863

End: 1581588

Strand: Direct

Name: dnaD [H]

Synonym: lp_1741

Alternate gene names: 28378422

Gene position: 1580863-1581588 (Clockwise)

Preceding gene: 28378421

Following gene: 28378423

Centisome position: 47.79

GC content: 44.9

Gene sequence:

>726_bases
ATGGAGTCCTTAGCTGCCGCGTTAGTGAATGATGGTCAAACGACCATTGCGAACGCATTATTGGCCCACTATCGTGAAAT
TGGGGTCACAAACGATGAATTATTGGTTTATTTGCAGTTCAAACGGTTAATTGATCAGGGTAATCAATTCCCAGATGCTG
CGGTAATTGCCAAGAGTTTAGGTGAATCGACAAATGCTGTTTTTCAGCGGCTACATGAAATGTTAGCCAAAAAATTGCTG
ACGATTGAATCGATCACGGCTGATGACCAAAAAATTCATGACCGTTATAATTTTGACGGCCTGTATGATAAGTTAGCAGT
TGCGCTCAAAAAGCAGCCAGTTAGCACTCAAGCTTCGGAACAAGCCACGAGTGAAAACAGTCGGCAAAAGGTTTTTCGGG
CAATTCAGACGGAATTTGGCCGTGACTTATCACCGATCGAAATGGAAAGTATTAGTAAGTGGTTCGACGAAGACCATTAT
GAACCGGAAGTTATCGAATTGGCATTGCGGGAAGCAGTTCTGCGTCAAGTCTATAACTTGACGTATATGGACCGAATTCT
GTTGAACTGGCAGAAGCGTAACTTAAAAACGGCTGCCCAGGTGGAAGCAGAGCGCCAACGCAGTATTGAGCAACGCTTGA
ATTCCGCTCCGCAACCACAACGCCAGACGGGCGCAAATGCTGGTCCGAAGATTCCGTTATTCAAATTAGGTGAAGACCAG
TCTTAA

Upstream 100 bases:

>100_bases
TGTTGAACCGGATTTACCCGTAAACTTTAATTGAAGGTTAGTTTTATTAAGAGCGTGGGACCTAGTCTCACGCTCTTAAT
AGTGAAAGGATGATAACGAG

Downstream 100 bases:

>100_bases
ACACTGTGCTGAAAAGCTTATCGGGGAAAACTGATTTTAAATAAAGTGGTGGCGATTGCCTGTGCGAGGCGTCGCTACCA
CTTTTTTTCGGGATGGGTTA

Product: DNA replication protein DnaD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MESLAAALVNDGQTTIANALLAHYREIGVTNDELLVYLQFKRLIDQGNQFPDAAVIAKSLGESTNAVFQRLHEMLAKKLL
TIESITADDQKIHDRYNFDGLYDKLAVALKKQPVSTQASEQATSENSRQKVFRAIQTEFGRDLSPIEMESISKWFDEDHY
EPEVIELALREAVLRQVYNLTYMDRILLNWQKRNLKTAAQVEAERQRSIEQRLNSAPQPQRQTGANAGPKIPLFKLGEDQ
S

Sequences:

>Translated_241_residues
MESLAAALVNDGQTTIANALLAHYREIGVTNDELLVYLQFKRLIDQGNQFPDAAVIAKSLGESTNAVFQRLHEMLAKKLL
TIESITADDQKIHDRYNFDGLYDKLAVALKKQPVSTQASEQATSENSRQKVFRAIQTEFGRDLSPIEMESISKWFDEDHY
EPEVIELALREAVLRQVYNLTYMDRILLNWQKRNLKTAAQVEAERQRSIEQRLNSAPQPQRQTGANAGPKIPLFKLGEDQ
S
>Mature_241_residues
MESLAAALVNDGQTTIANALLAHYREIGVTNDELLVYLQFKRLIDQGNQFPDAAVIAKSLGESTNAVFQRLHEMLAKKLL
TIESITADDQKIHDRYNFDGLYDKLAVALKKQPVSTQASEQATSENSRQKVFRAIQTEFGRDLSPIEMESISKWFDEDHY
EPEVIELALREAVLRQVYNLTYMDRILLNWQKRNLKTAAQVEAERQRSIEQRLNSAPQPQRQTGANAGPKIPLFKLGEDQ
S

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 27375; Mature: 27375

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESLAAALVNDGQTTIANALLAHYREIGVTNDELLVYLQFKRLIDQGNQFPDAAVIAKSL
CCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
GESTNAVFQRLHEMLAKKLLTIESITADDQKIHDRYNFDGLYDKLAVALKKQPVSTQASE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH
QATSENSRQKVFRAIQTEFGRDLSPIEMESISKWFDEDHYEPEVIELALREAVLRQVYNL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TYMDRILLNWQKRNLKTAAQVEAERQRSIEQRLNSAPQPQRQTGANAGPKIPLFKLGEDQ
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEECCCCC
S
C
>Mature Secondary Structure
MESLAAALVNDGQTTIANALLAHYREIGVTNDELLVYLQFKRLIDQGNQFPDAAVIAKSL
CCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
GESTNAVFQRLHEMLAKKLLTIESITADDQKIHDRYNFDGLYDKLAVALKKQPVSTQASE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH
QATSENSRQKVFRAIQTEFGRDLSPIEMESISKWFDEDHYEPEVIELALREAVLRQVYNL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TYMDRILLNWQKRNLKTAAQVEAERQRSIEQRLNSAPQPQRQTGANAGPKIPLFKLGEDQ
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEECCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]