| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is dinG [H]
Identifier: 28378418
GI number: 28378418
Start: 1574877
End: 1577681
Strand: Direct
Name: dinG [H]
Synonym: lp_1737
Alternate gene names: 28378418
Gene position: 1574877-1577681 (Clockwise)
Preceding gene: 28378417
Following gene: 28378419
Centisome position: 47.6
GC content: 48.16
Gene sequence:
>2805_bases ATGAAACCAAACACAACTTATGCGGTAGTTGATATTGAAACTACTGGAACTAGTGTGAAGGACGGCGACCGGATTATTCA AATCGGTTGCGCGTTTGTTAAGAATAATAAAATAATTAATACATTTGCCACGGACGTTAATCCGTTAACAACGGTTCCGG CCGTTATCGAGAATTTAACGGGGATCAGCAATGCACGGGTGCGCAAAGCACCACCCTTTGATGATCTGGCTGGTACGGTA TACAGCTTATTACAAGGGACTGTTTTTGTCGCCCACAACGTGAACTTTGACCTGCCATTTATCAATTCAGAATTGCAGCG TGTCGGTTATCCAGAACTACCAATTCAGGCCGTTGACACTGTGTCTCTTAGCCAAATTCTGTTACCGACTGCTTCGAGTT TTCGGTTGCGGGACTTGAGTCACTTGCTTGCGATTGACCATAATCATCCACATTCTGCGGATAGTGATGCAATTGCTACG GCCCACTTGTTTATCACGTTACAACAGCGGCTCGCACACTTACCATTGATCACGTTACAACAAATGGTGCAATTAGCACC GGAGTTACCACGTGAAACGGCCGACTTGTTTGCATACGCCTTTCAACAGGGCAAACAACATCCACAGCGGTTACCAACTG ACTTAGTGATCAAAAACGGGCTCGCTCTGCGTAAACAGCGATTGCCACAGCAAGCCGCGGGTCGTAAAGCGGCACGCTAT CCGTTGACGAAAGCACAAAAGCAGCATATTTTTGGTGATCGCTTGACTTATCGGCCACAACAGGCCCGGATGATGAACCA GATTTATCGGCACTACTCAAAACAGTCTGCTGAACAAGTACCATTGTTGATTGAAGCACCGACCGGAACGGGTAAAACAC TCGGGTATTTGCTGCCACTCGCCTACTTGGCACAGGATGGTCAACAGGTGGTCGTTAGCACGGCGACGACGGTCTTACAA ACGCAGTTACGTGATCAGGGTGTGGCGTTGTTGAATCAGTTGTTGCCTAATCCTGTGACGGCGGTTGTGATTAAGGGTAA TCAGCATTACGTTGATTTAAACCGGTTTGCCCGTGGCTTGGCGTTGCATGAACATTCGAAGCAAACGCAATTATTGAAGT TGCGCGTGCTAGTGTGGTTAACGATGACAACGACTGGTGATCTGGATGAATTGCACTTGAGCACGTATCAAGCGCCATAC TTTAGCGAAATCGCCCATCATGGCGTGGCCTCGTTGAAAGCTGATGACCCGTTTTTTAAGGAAGATTTCTTACGCTTTCG GGATCAATTGACCGCGCAAGCGACTTTTATCATTACCAATCATGCCTACCTGATGCGCCACGTGGCCCAATTGGGTAGCC GTCAAGAGCGGCCACTGCTGGTTCTTGATGAGGCCCAGCATCTGGCAGATGGCGTCGTTCGTGACTCACGGCAGACGTTT GATTTCAATGGCTACATGGCGACCTGCCACAGCTTGATCAGTCGCATTGACACGGAACATAGTCTAAATTTACGGGCACT GTTCGCGGAACAACCACAGGCCGATTATCGTCTGAAATTATTAGATAATTCATTGAATGATACTGACCTACACCTGCAAC AACTGCAGGCGGCGCTAGCCAGAACGTTTGTACCAGCACAAAAGGGCGGCAATCAGCCTGCTGAATTAGGAATCACCACG GATCAGTTGACTGATTTCTTTGCGGCCCACAATCCGCTGATCAAACAATTACAAACGGCCATTGAAAACTGTTTTTTACA GTTTCAACAATTAAATGAGCAGTATCAACATGATCAATCGCAAATCTTGCCTAGTGAACAACACGTCCTCGACGACTTTG ACAATCGTCTTCAACATCTTCGTCAGGGCTATGAGTTATTACAAACGTGGTTAGTGCCAGCTTCGCGGGAACAACGGGTC TTCTGGGTGAGCCTTAATCAATGGCATGATCGCGGCAGTCTCACGCTCGCGGGTAGCTTGATCGATACGCAAGGGTATTT TAAGACGCAACTATATCCTTACTTCAGTGCGCCACTATTAACTGGTGCCACGCTATTTGCCACTGGGAAATCTCAGTACG TTTATTCGCAATTGGATATTGACCAAGCAACGGCTAAGCATCACCGATTATCACCACCGTTTGATTTAGAACACCAGGCA CGGCTATTCGTCGCTACGGATGCTACTGCGGCGGAAGCACCCAGTGGCAAGCAGCGCGTGGCATACTTGACGCATGCGAT TCACGACATCGTGATGGCAGCGCCTAAGCAAACGTTGGTCTTGTTCAATTCACTGAATATGATTGAAGCAGTCTTTTACA GTTTGCATCAAACGGATCTACCTGGTGATCGCGAAATTTTGGCTCAAGGCGTCAATGGTAGTCGTGAAAAGCTGCTTCGG CGCTTTATGCAGGGGGACGATGCCATTCTCCTGGGTGCCGGTAGTTTCTGGGAGGGGATCGACTTGCCACAAGAACAGTT GGAATTGTTGATCGTCACGCAATTACCGTTTGAATCGCCCGACCAGACGACAACCAAGGCCCGTTATCAACAACTAAGGC AAGCACAACTCAATCCGTTCTATAACGAAGCGTTACCGAAAGCGGCATTGAAGTTACGTCAGGGAATCGGCCGGTTGATT CGGACGGATGAAGACCGAGGGGCAGCGGTGATTCTCGATGACCGTTTGATGACGAAACGATACGGGCAGACGATTCTTAA AGCTTTACCGAAAACGTTGCCGCCCGCAACCGGTTCATTGACGATGATTACGCAGGAACTTCAAAGTTTTTTCAAAACTA AGTAA
Upstream 100 bases:
>100_bases TCGATTAGTTGGTCGAACATCAGCGTTAGTGTTGATGACGGATTCACGCGGTAACCAATCTAATGAACATCTTTACAATC CATAACTTGGGGAAATGACC
Downstream 100 bases:
>100_bases GAAACCATTCCGCAATCAGTTAAATTTGCTATAATTAATTTATCTGTTTTTGAAAGGAAGAGCATATGCGAGTTCAACGT AGAAGGCGCCCTGAGCGACT
Product: ATP-dependent helicase DinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 934; Mature: 934
Protein sequence:
>934_residues MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIINTFATDVNPLTTVPAVIENLTGISNARVRKAPPFDDLAGTV YSLLQGTVFVAHNVNFDLPFINSELQRVGYPELPIQAVDTVSLSQILLPTASSFRLRDLSHLLAIDHNHPHSADSDAIAT AHLFITLQQRLAHLPLITLQQMVQLAPELPRETADLFAYAFQQGKQHPQRLPTDLVIKNGLALRKQRLPQQAAGRKAARY PLTKAQKQHIFGDRLTYRPQQARMMNQIYRHYSKQSAEQVPLLIEAPTGTGKTLGYLLPLAYLAQDGQQVVVSTATTVLQ TQLRDQGVALLNQLLPNPVTAVVIKGNQHYVDLNRFARGLALHEHSKQTQLLKLRVLVWLTMTTTGDLDELHLSTYQAPY FSEIAHHGVASLKADDPFFKEDFLRFRDQLTAQATFIITNHAYLMRHVAQLGSRQERPLLVLDEAQHLADGVVRDSRQTF DFNGYMATCHSLISRIDTEHSLNLRALFAEQPQADYRLKLLDNSLNDTDLHLQQLQAALARTFVPAQKGGNQPAELGITT DQLTDFFAAHNPLIKQLQTAIENCFLQFQQLNEQYQHDQSQILPSEQHVLDDFDNRLQHLRQGYELLQTWLVPASREQRV FWVSLNQWHDRGSLTLAGSLIDTQGYFKTQLYPYFSAPLLTGATLFATGKSQYVYSQLDIDQATAKHHRLSPPFDLEHQA RLFVATDATAAEAPSGKQRVAYLTHAIHDIVMAAPKQTLVLFNSLNMIEAVFYSLHQTDLPGDREILAQGVNGSREKLLR RFMQGDDAILLGAGSFWEGIDLPQEQLELLIVTQLPFESPDQTTTKARYQQLRQAQLNPFYNEALPKAALKLRQGIGRLI RTDEDRGAAVILDDRLMTKRYGQTILKALPKTLPPATGSLTMITQELQSFFKTK
Sequences:
>Translated_934_residues MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIINTFATDVNPLTTVPAVIENLTGISNARVRKAPPFDDLAGTV YSLLQGTVFVAHNVNFDLPFINSELQRVGYPELPIQAVDTVSLSQILLPTASSFRLRDLSHLLAIDHNHPHSADSDAIAT AHLFITLQQRLAHLPLITLQQMVQLAPELPRETADLFAYAFQQGKQHPQRLPTDLVIKNGLALRKQRLPQQAAGRKAARY PLTKAQKQHIFGDRLTYRPQQARMMNQIYRHYSKQSAEQVPLLIEAPTGTGKTLGYLLPLAYLAQDGQQVVVSTATTVLQ TQLRDQGVALLNQLLPNPVTAVVIKGNQHYVDLNRFARGLALHEHSKQTQLLKLRVLVWLTMTTTGDLDELHLSTYQAPY FSEIAHHGVASLKADDPFFKEDFLRFRDQLTAQATFIITNHAYLMRHVAQLGSRQERPLLVLDEAQHLADGVVRDSRQTF DFNGYMATCHSLISRIDTEHSLNLRALFAEQPQADYRLKLLDNSLNDTDLHLQQLQAALARTFVPAQKGGNQPAELGITT DQLTDFFAAHNPLIKQLQTAIENCFLQFQQLNEQYQHDQSQILPSEQHVLDDFDNRLQHLRQGYELLQTWLVPASREQRV FWVSLNQWHDRGSLTLAGSLIDTQGYFKTQLYPYFSAPLLTGATLFATGKSQYVYSQLDIDQATAKHHRLSPPFDLEHQA RLFVATDATAAEAPSGKQRVAYLTHAIHDIVMAAPKQTLVLFNSLNMIEAVFYSLHQTDLPGDREILAQGVNGSREKLLR RFMQGDDAILLGAGSFWEGIDLPQEQLELLIVTQLPFESPDQTTTKARYQQLRQAQLNPFYNEALPKAALKLRQGIGRLI RTDEDRGAAVILDDRLMTKRYGQTILKALPKTLPPATGSLTMITQELQSFFKTK >Mature_934_residues MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIINTFATDVNPLTTVPAVIENLTGISNARVRKAPPFDDLAGTV YSLLQGTVFVAHNVNFDLPFINSELQRVGYPELPIQAVDTVSLSQILLPTASSFRLRDLSHLLAIDHNHPHSADSDAIAT AHLFITLQQRLAHLPLITLQQMVQLAPELPRETADLFAYAFQQGKQHPQRLPTDLVIKNGLALRKQRLPQQAAGRKAARY PLTKAQKQHIFGDRLTYRPQQARMMNQIYRHYSKQSAEQVPLLIEAPTGTGKTLGYLLPLAYLAQDGQQVVVSTATTVLQ TQLRDQGVALLNQLLPNPVTAVVIKGNQHYVDLNRFARGLALHEHSKQTQLLKLRVLVWLTMTTTGDLDELHLSTYQAPY FSEIAHHGVASLKADDPFFKEDFLRFRDQLTAQATFIITNHAYLMRHVAQLGSRQERPLLVLDEAQHLADGVVRDSRQTF DFNGYMATCHSLISRIDTEHSLNLRALFAEQPQADYRLKLLDNSLNDTDLHLQQLQAALARTFVPAQKGGNQPAELGITT DQLTDFFAAHNPLIKQLQTAIENCFLQFQQLNEQYQHDQSQILPSEQHVLDDFDNRLQHLRQGYELLQTWLVPASREQRV FWVSLNQWHDRGSLTLAGSLIDTQGYFKTQLYPYFSAPLLTGATLFATGKSQYVYSQLDIDQATAKHHRLSPPFDLEHQA RLFVATDATAAEAPSGKQRVAYLTHAIHDIVMAAPKQTLVLFNSLNMIEAVFYSLHQTDLPGDREILAQGVNGSREKLLR RFMQGDDAILLGAGSFWEGIDLPQEQLELLIVTQLPFESPDQTTTKARYQQLRQAQLNPFYNEALPKAALKLRQGIGRLI RTDEDRGAAVILDDRLMTKRYGQTILKALPKTLPPATGSLTMITQELQSFFKTK
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=648, Percent_Identity=27.3148148148148, Blast_Score=166, Evalue=5e-42, Organism=Escherichia coli, GI1787018, Length=111, Percent_Identity=36.036036036036, Blast_Score=73, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR006054 - InterPro: IPR006310 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 104977; Mature: 104977
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIINTFATDVNPLTTVPAVIENLT CCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCHHHHHHHHHHHC GISNARVRKAPPFDDLAGTVYSLLQGTVFVAHNVNFDLPFINSELQRVGYPELPIQAVDT CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHCH VSLSQILLPTASSFRLRDLSHLLAIDHNHPHSADSDAIATAHLFITLQQRLAHLPLITLQ HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH QMVQLAPELPRETADLFAYAFQQGKQHPQRLPTDLVIKNGLALRKQRLPQQAAGRKAARY HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHCCHHHHHHHCCHHHHCCCHHCC PLTKAQKQHIFGDRLTYRPQQARMMNQIYRHYSKQSAEQVPLLIEAPTGTGKTLGYLLPL CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCCCHHHHHHHH AYLAQDGQQVVVSTATTVLQTQLRDQGVALLNQLLPNPVTAVVIKGNQHYVDLNRFARGL HHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEHHHHHHHH ALHEHSKQTQLLKLRVLVWLTMTTTGDLDELHLSTYQAPYFSEIAHHGVASLKADDPFFK HHHHHHHHHHHHHHEEHHEEEECCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHH EDFLRFRDQLTAQATFIITNHAYLMRHVAQLGSRQERPLLVLDEAQHLADGVVRDSRQTF HHHHHHHHHHHHEEEEEEECHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCCE DFNGYMATCHSLISRIDTEHSLNLRALFAEQPQADYRLKLLDNSLNDTDLHLQQLQAALA ECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH RTFVPAQKGGNQPAELGITTDQLTDFFAAHNPLIKQLQTAIENCFLQFQQLNEQYQHDQS HHHCCHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH QILPSEQHVLDDFDNRLQHLRQGYELLQTWLVPASREQRVFWVSLNQWHDRGSLTLAGSL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEE IDTQGYFKTQLYPYFSAPLLTGATLFATGKSQYVYSQLDIDQATAKHHRLSPPFDLEHQA ECCCCCCEEEECCCCCCHHHCCCEEEECCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCC RLFVATDATAAEAPSGKQRVAYLTHAIHDIVMAAPKQTLVLFNSLNMIEAVFYSLHQTDL EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHCCCC PGDREILAQGVNGSREKLLRRFMQGDDAILLGAGSFWEGIDLPQEQLELLIVTQLPFESP CCCHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHEEEEEEECCCCCC DQTTTKARYQQLRQAQLNPFYNEALPKAALKLRQGIGRLIRTDEDRGAAVILDDRLMTKR CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHH YGQTILKALPKTLPPATGSLTMITQELQSFFKTK HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIINTFATDVNPLTTVPAVIENLT CCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCHHHHHHHHHHHC GISNARVRKAPPFDDLAGTVYSLLQGTVFVAHNVNFDLPFINSELQRVGYPELPIQAVDT CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHCH VSLSQILLPTASSFRLRDLSHLLAIDHNHPHSADSDAIATAHLFITLQQRLAHLPLITLQ HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH QMVQLAPELPRETADLFAYAFQQGKQHPQRLPTDLVIKNGLALRKQRLPQQAAGRKAARY HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHCCHHHHHHHCCHHHHCCCHHCC PLTKAQKQHIFGDRLTYRPQQARMMNQIYRHYSKQSAEQVPLLIEAPTGTGKTLGYLLPL CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCCCHHHHHHHH AYLAQDGQQVVVSTATTVLQTQLRDQGVALLNQLLPNPVTAVVIKGNQHYVDLNRFARGL HHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEHHHHHHHH ALHEHSKQTQLLKLRVLVWLTMTTTGDLDELHLSTYQAPYFSEIAHHGVASLKADDPFFK HHHHHHHHHHHHHHEEHHEEEECCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHH EDFLRFRDQLTAQATFIITNHAYLMRHVAQLGSRQERPLLVLDEAQHLADGVVRDSRQTF HHHHHHHHHHHHEEEEEEECHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCCE DFNGYMATCHSLISRIDTEHSLNLRALFAEQPQADYRLKLLDNSLNDTDLHLQQLQAALA ECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH RTFVPAQKGGNQPAELGITTDQLTDFFAAHNPLIKQLQTAIENCFLQFQQLNEQYQHDQS HHHCCHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH QILPSEQHVLDDFDNRLQHLRQGYELLQTWLVPASREQRVFWVSLNQWHDRGSLTLAGSL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEE IDTQGYFKTQLYPYFSAPLLTGATLFATGKSQYVYSQLDIDQATAKHHRLSPPFDLEHQA ECCCCCCEEEECCCCCCHHHCCCEEEECCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCC RLFVATDATAAEAPSGKQRVAYLTHAIHDIVMAAPKQTLVLFNSLNMIEAVFYSLHQTDL EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHCCCC PGDREILAQGVNGSREKLLRRFMQGDDAILLGAGSFWEGIDLPQEQLELLIVTQLPFESP CCCHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHEEEEEEECCCCCC DQTTTKARYQQLRQAQLNPFYNEALPKAALKLRQGIGRLIRTDEDRGAAVILDDRLMTKR CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHH YGQTILKALPKTLPPATGSLTMITQELQSFFKTK HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]