Click here to switch to the map view.

The map label for this gene is 28378393

Identifier: 28378393

GI number: 28378393

Start: 1549580

End: 1549942

Strand: Direct

Name: 28378393

Synonym: lp_1704

Alternate gene names: NA

Gene position: 1549580-1549942 (Clockwise)

Preceding gene: 28378388

Following gene: 28378394

Centisome position: 46.84

GC content: 44.9

Gene sequence:

>363_bases
ATGATATGCATCATTACTGAATTAGTCGGGTCAATGAGCATTTTGATTGCTCAATATAAATATTATAGTTATGATAATTT
TAATCACACAATATCGGGATGGAGCGTGTTCACAATGGGATGGATAGGTGTTGCGATATTAGGACTAACAATAGGTATCG
TTGCAAATGCGGTAGGCGCACATGGTCGGCGTCAAACGACAATTAATTTAATCGCAGGCTTATTCGGTGCACTTGGTGGC
CAGCTGTCTTTTGGATGGTTCGGGCCAACAGTTGCTGGAATGACGTTGTTGCCAGTCGTGAGCGGGGCGATGATACTTAT
TGTGATCGGAACCGTTGCTGCCCAGGCGCTTCAGCCGCAGTAA

Upstream 100 bases:

>100_bases
ATGACAATCACCTCTTGATTAAAAAAATTAAGTTTATTCATCGCTTATTTAGTAAGCTTTTGATAGTCTCAGTATAGCTT
GAACACTAGTTTGACTGGTA

Downstream 100 bases:

>100_bases
TTGTGATTAGGCATAAAAGGATTTGTTGAAGTAGCACTTGTTAGCGTTATCAAAAGATGGAGGTGTCCGTAATGGCTAAA
ATTAAACGACAGACCCCTGG

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MICIITELVGSMSILIAQYKYYSYDNFNHTISGWSVFTMGWIGVAILGLTIGIVANAVGAHGRRQTTINLIAGLFGALGG
QLSFGWFGPTVAGMTLLPVVSGAMILIVIGTVAAQALQPQ

Sequences:

>Translated_120_residues
MICIITELVGSMSILIAQYKYYSYDNFNHTISGWSVFTMGWIGVAILGLTIGIVANAVGAHGRRQTTINLIAGLFGALGG
QLSFGWFGPTVAGMTLLPVVSGAMILIVIGTVAAQALQPQ
>Mature_120_residues
MICIITELVGSMSILIAQYKYYSYDNFNHTISGWSVFTMGWIGVAILGLTIGIVANAVGAHGRRQTTINLIAGLFGALGG
QLSFGWFGPTVAGMTLLPVVSGAMILIVIGTVAAQALQPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12589; Mature: 12589

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICIITELVGSMSILIAQYKYYSYDNFNHTISGWSVFTMGWIGVAILGLTIGIVANAVGA
CEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
HGRRQTTINLIAGLFGALGGQLSFGWFGPTVAGMTLLPVVSGAMILIVIGTVAAQALQPQ
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MICIITELVGSMSILIAQYKYYSYDNFNHTISGWSVFTMGWIGVAILGLTIGIVANAVGA
CEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
HGRRQTTINLIAGLFGALGGQLSFGWFGPTVAGMTLLPVVSGAMILIVIGTVAAQALQPQ
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA