Click here to switch to the map view.

The map label for this gene is 28378332

Identifier: 28378332

GI number: 28378332

Start: 1490518

End: 1490865

Strand: Direct

Name: 28378332

Synonym: lp_1634

Alternate gene names: NA

Gene position: 1490518-1490865 (Clockwise)

Preceding gene: 28378331

Following gene: 28378333

Centisome position: 45.05

GC content: 39.37

Gene sequence:

>348_bases
ATGGAAATTGAAAAAAATTATCGAATCAATTCGTTATTCGAGTTTTATGAACCGTTATTAACGAATAAGCAAAAAGCCTA
TATTCAACTGTACTACGCTGATGACTATTCCTTAGGCGAGATTGCAGCGGAGTTCTCAGTTTCGCGCCAGGCCGTCTATG
ATAACATCAAGCGGACCGAAAAGATTTTAGAAGGTTACGAGGCTAAGCTGCATCTCTACCACGACTTTGTGGAACGTAAT
CACGAAGTTGACGCGATCTCTGACTATATTAAGCAAAATTACCATGGGGATACCCAGTTAATTAAGATGATTCAACAACT
AGTCAACTTGGAAGCTGACTCAGAATAA

Upstream 100 bases:

>100_bases
TATTTTTACCACAAATGGCGACTGATAGTTGACGAATGGCGATAAAATCGGTACTCTTATTTAGTGTGTAGTCTGTATGA
TAAGCGTGAGGAGTCCCCAC

Downstream 100 bases:

>100_bases
TAATAAAGGTTAGGTGACACTAATGGCATTTGAAGGCCTAACGGAACGTTTACAAAAAGCAATGACCAATTTACGGCGCA
AGGGGAAGATTTCGGAAAGT

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MEIEKNYRINSLFEFYEPLLTNKQKAYIQLYYADDYSLGEIAAEFSVSRQAVYDNIKRTEKILEGYEAKLHLYHDFVERN
HEVDAISDYIKQNYHGDTQLIKMIQQLVNLEADSE

Sequences:

>Translated_115_residues
MEIEKNYRINSLFEFYEPLLTNKQKAYIQLYYADDYSLGEIAAEFSVSRQAVYDNIKRTEKILEGYEAKLHLYHDFVERN
HEVDAISDYIKQNYHGDTQLIKMIQQLVNLEADSE
>Mature_115_residues
MEIEKNYRINSLFEFYEPLLTNKQKAYIQLYYADDYSLGEIAAEFSVSRQAVYDNIKRTEKILEGYEAKLHLYHDFVERN
HEVDAISDYIKQNYHGDTQLIKMIQQLVNLEADSE

Specific function: Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein

COG id: COG2739

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0122 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1634_LACPL (Q88WJ7)

Other databases:

- EMBL:   AL935256
- RefSeq:   NP_785224.1
- ProteinModelPortal:   Q88WJ7
- SMR:   Q88WJ7
- GeneID:   1063846
- GenomeReviews:   AL935263_GR
- KEGG:   lpl:lp_1634
- NMPDR:   fig|220668.1.peg.1358
- HOGENOM:   HBG427419
- OMA:   YDNLKRS
- ProtClustDB:   PRK00118
- BioCyc:   LPLA220668:LP_1634-MONOMER
- HAMAP:   MF_00245
- InterPro:   IPR013324
- InterPro:   IPR007394
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF04297 UPF0122; SSF88659 Sigma_r3_r4

EC number: NA

Molecular weight: Translated: 13692; Mature: 13692

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIEKNYRINSLFEFYEPLLTNKQKAYIQLYYADDYSLGEIAAEFSVSRQAVYDNIKRTE
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
KILEGYEAKLHLYHDFVERNHEVDAISDYIKQNYHGDTQLIKMIQQLVNLEADSE
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEIEKNYRINSLFEFYEPLLTNKQKAYIQLYYADDYSLGEIAAEFSVSRQAVYDNIKRTE
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
KILEGYEAKLHLYHDFVERNHEVDAISDYIKQNYHGDTQLIKMIQQLVNLEADSE
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12566566