| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is yieF [C]
Identifier: 28378151
GI number: 28378151
Start: 1304875
End: 1307313
Strand: Direct
Name: yieF [C]
Synonym: lp_1425
Alternate gene names: 28378151
Gene position: 1304875-1307313 (Clockwise)
Preceding gene: 28378150
Following gene: 28378152
Centisome position: 39.44
GC content: 48.3
Gene sequence:
>2439_bases ATGAAATTTGTTGGAATTGTTGGAACGAATGCTCAGCATTCGTACAATCGGATGTTGCTGGAATTTATGCAACGACATTT TGCGACACAAGCCGAAATCGAAATTTTAGAATTGACTGATGTCCCGATGTTTGATGAATCGAATGATCAAACTGACAGTA CCATCATTCAAAACTTTGCCACTAAAATTGCGACGGCTGACGGGGTTATCATTGCCTCACCGGAACACAATCATTCCGTG CCTTCCGCGTTGAAAAGCATTATTGAATGGTTATCATTCAAAATTCACCCATTAGATGGTCAAGCAGTAATGATTGTTGG GGCTTCATACAGCGTCCAAGGATCGTCACGCGCGCAACTACACCTGCGCCAGATTTTAGACGCTCCCGGTGTTAACGCCA GTGTCATGCCCGGTTCAGAATTCTTATTAGGTCGTGCCCAAACGGCTTTTGACGATCAAGGTAATTTAAAGGTGCAAGGG ACGGTTGATTTTCTGGACAGTTGTTTTGCAAAGTTTCAGAAGTTTGCGACCATCGTCGCCGAGATGCGGGCACCAGAAGC GCTTAGCTTTGCCCCGGGTACTTATCAGGTGACGGCCACTGGACATAATGGCGAATTGCCAATGCGAGTGACCCTCTCCG CTGACCGGATTGAAAATATTGAAATTGATACCAGTAGTGAAACGCAGGGGATTGCCGATGTGGCTTTTGAACGCATTCCC AAGGAGATTATTGCGGGTCAAACGCTCGCTGTTGATGCGATTTCCGGGGCTTCAATTACCAGTCATGGTGTTATCGATGG GGTCGCTCGTGCGGTCAAAGAAGCTGGTGCCAATCCTGATGATTTGAAGAAACGGCGTGCGACTAAGCAGGTCGCTCAAC CTGCTGTCAAAGAAGTGACGACTGATGTCGTAGTGGTTGGTGCTGGTGGGGCTGGTATGACGGCAGCGGCCAAAGTGTTA CAGGCTGGTCATCAAGCCGTTGTCCTAGAAAAATTCCCAGCTGTCGGTGGTAATACCGTTCGCGCTGGGGGGCCCATGAA TGCGGCTGATCCGGATTGGCAACGACAGTTTGCAGCTTTGCCAGGTGAAAAGCAAACGTTGAAGGATCTGAGTGAGCGTG ATGAAAGTACAATTGCACCTGAATATCGGGCTGATTTCCGTAAATTGAAACAGCAGATTGACGCATACCTGACTGCCAAT ACCAATCAAAAGGGCACCTTATTTGATTCAACCTTGTTACATCGGATTCAAACTTATTTAGGTGGTCAACGGACTGATTT GAACGGTCAAGAGATTCACGGTCAGTATGATTTGGTAAAAGAATTGACGGATAACGCCCTGGATTCAGTCAAGTGGTTAC AATCGATTGGTGTGAAATTTGATGAAAGCCAAGTGACAATGCCAGTTGGAGCCATCTGGCGGCGCGGGCATAAGCCAATG GGCGATCTAGGGTTTGCTTACATCAAGACTTTACGGGCCTTTGTTGAACAACAGGGTGGTACGATTATGACGGAAACGCC GGTAAAAGAATTACTGGTGACAGATGGGCAAGTTCGTGGCGTCATTGCGACTAATGCGGCTCATGAGAAAGTTATTGTCC ATGCTGATGCGGTGATTTTAGCTTCTGGTGGTTTCGCAGCGAATACTAAAATGTTACAAAAGTACAATACGTACTGGACG GCCATCGACGATGATGTCAAGACGACTAATTCACCCGCAATGACTGGTGATGGAATTCGGCTAGGGACTAGTGTTGGTGC AGCATTAGTTGGGATGGGCTTCTCACAAATGATGCCGGTATCTGATCCGGAGACCGGCGAATTATTCAGTGGGCTCCAAG TGCCACCGGCAAACTTTGTGATGGTAAACCAGCAAGGAAAACGGTTCGTCAATGAGTACGGCAGTCGTGATGAGTTAACT CAGGCGGCCATTGATAATGGGAGTCTTTTCTATTTAATTGCCGATGATGAAATTAAAAAGACGGCTTACAACACGACACA AGCTAAAATTGACCAGCAGGTGGCGAATGGGACCTTGTTCCGTGCTGATACTTTGACAGATTTAGCGCAACAAATTGGCA TGGACCCGGCAGCCCTGACCAAGACGATTGCGGATTACAATCGTTACGTTGATGCCGGCGAGGATCCTGAATTTCATAAG ACGGCCTTTGATTTGAAAGTTGCCGTGGCACCATTTTACGCAACGCCGCGTAAACCAGCAACCCACCACACGATGGGGGG CTTGAAGATTGATTCGGATGCTCACGTTTTAAATACGGACGGCCAGGTTATCGACGGGCTATACGCGGCGGGAGAAGTAG CCGGTGGAATTCACGCGGGTAACCGGCTAGGTGGTAACTCGCTTAGTGATATCTTTACGTTCGGTCGAATCGCGGCGGCT CATGCTGTTGCTGAGCACGTTGATCCGGTGACGGCCTAA
Upstream 100 bases:
>100_bases TTGATTTTGTAGATTTAACGAATAAAATCATGCCGTCGAGTCAGTTTTTCGAAAAGAGTAAGCAGTTCTCGTGGCGGCAA GTGACTGGGGAGGAATAAAC
Downstream 100 bases:
>100_bases GGCAATTATTAAGTCGCTACGTTGGTTGAGTCGTGTTAGTGTATAATCGACCGTAGAGAGAAGCAGATCGACAAGGGAGA TTATCACATGCAAAAACTAA
Product: fumarate reductase, flavoprotein subunit precursor
Products: NA
Alternate protein names: Flavocytochrome c; FL cyt [H]
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MKFVGIVGTNAQHSYNRMLLEFMQRHFATQAEIEILELTDVPMFDESNDQTDSTIIQNFATKIATADGVIIASPEHNHSV PSALKSIIEWLSFKIHPLDGQAVMIVGASYSVQGSSRAQLHLRQILDAPGVNASVMPGSEFLLGRAQTAFDDQGNLKVQG TVDFLDSCFAKFQKFATIVAEMRAPEALSFAPGTYQVTATGHNGELPMRVTLSADRIENIEIDTSSETQGIADVAFERIP KEIIAGQTLAVDAISGASITSHGVIDGVARAVKEAGANPDDLKKRRATKQVAQPAVKEVTTDVVVVGAGGAGMTAAAKVL QAGHQAVVLEKFPAVGGNTVRAGGPMNAADPDWQRQFAALPGEKQTLKDLSERDESTIAPEYRADFRKLKQQIDAYLTAN TNQKGTLFDSTLLHRIQTYLGGQRTDLNGQEIHGQYDLVKELTDNALDSVKWLQSIGVKFDESQVTMPVGAIWRRGHKPM GDLGFAYIKTLRAFVEQQGGTIMTETPVKELLVTDGQVRGVIATNAAHEKVIVHADAVILASGGFAANTKMLQKYNTYWT AIDDDVKTTNSPAMTGDGIRLGTSVGAALVGMGFSQMMPVSDPETGELFSGLQVPPANFVMVNQQGKRFVNEYGSRDELT QAAIDNGSLFYLIADDEIKKTAYNTTQAKIDQQVANGTLFRADTLTDLAQQIGMDPAALTKTIADYNRYVDAGEDPEFHK TAFDLKVAVAPFYATPRKPATHHTMGGLKIDSDAHVLNTDGQVIDGLYAAGEVAGGIHAGNRLGGNSLSDIFTFGRIAAA HAVAEHVDPVTA
Sequences:
>Translated_812_residues MKFVGIVGTNAQHSYNRMLLEFMQRHFATQAEIEILELTDVPMFDESNDQTDSTIIQNFATKIATADGVIIASPEHNHSV PSALKSIIEWLSFKIHPLDGQAVMIVGASYSVQGSSRAQLHLRQILDAPGVNASVMPGSEFLLGRAQTAFDDQGNLKVQG TVDFLDSCFAKFQKFATIVAEMRAPEALSFAPGTYQVTATGHNGELPMRVTLSADRIENIEIDTSSETQGIADVAFERIP KEIIAGQTLAVDAISGASITSHGVIDGVARAVKEAGANPDDLKKRRATKQVAQPAVKEVTTDVVVVGAGGAGMTAAAKVL QAGHQAVVLEKFPAVGGNTVRAGGPMNAADPDWQRQFAALPGEKQTLKDLSERDESTIAPEYRADFRKLKQQIDAYLTAN TNQKGTLFDSTLLHRIQTYLGGQRTDLNGQEIHGQYDLVKELTDNALDSVKWLQSIGVKFDESQVTMPVGAIWRRGHKPM GDLGFAYIKTLRAFVEQQGGTIMTETPVKELLVTDGQVRGVIATNAAHEKVIVHADAVILASGGFAANTKMLQKYNTYWT AIDDDVKTTNSPAMTGDGIRLGTSVGAALVGMGFSQMMPVSDPETGELFSGLQVPPANFVMVNQQGKRFVNEYGSRDELT QAAIDNGSLFYLIADDEIKKTAYNTTQAKIDQQVANGTLFRADTLTDLAQQIGMDPAALTKTIADYNRYVDAGEDPEFHK TAFDLKVAVAPFYATPRKPATHHTMGGLKIDSDAHVLNTDGQVIDGLYAAGEVAGGIHAGNRLGGNSLSDIFTFGRIAAA HAVAEHVDPVTA >Mature_812_residues MKFVGIVGTNAQHSYNRMLLEFMQRHFATQAEIEILELTDVPMFDESNDQTDSTIIQNFATKIATADGVIIASPEHNHSV PSALKSIIEWLSFKIHPLDGQAVMIVGASYSVQGSSRAQLHLRQILDAPGVNASVMPGSEFLLGRAQTAFDDQGNLKVQG TVDFLDSCFAKFQKFATIVAEMRAPEALSFAPGTYQVTATGHNGELPMRVTLSADRIENIEIDTSSETQGIADVAFERIP KEIIAGQTLAVDAISGASITSHGVIDGVARAVKEAGANPDDLKKRRATKQVAQPAVKEVTTDVVVVGAGGAGMTAAAKVL QAGHQAVVLEKFPAVGGNTVRAGGPMNAADPDWQRQFAALPGEKQTLKDLSERDESTIAPEYRADFRKLKQQIDAYLTAN TNQKGTLFDSTLLHRIQTYLGGQRTDLNGQEIHGQYDLVKELTDNALDSVKWLQSIGVKFDESQVTMPVGAIWRRGHKPM GDLGFAYIKTLRAFVEQQGGTIMTETPVKELLVTDGQVRGVIATNAAHEKVIVHADAVILASGGFAANTKMLQKYNTYWT AIDDDVKTTNSPAMTGDGIRLGTSVGAALVGMGFSQMMPVSDPETGELFSGLQVPPANFVMVNQQGKRFVNEYGSRDELT QAAIDNGSLFYLIADDEIKKTAYNTTQAKIDQQVANGTLFRADTLTDLAQQIGMDPAALTKTIADYNRYVDAGEDPEFHK TAFDLKVAVAPFYATPRKPATHHTMGGLKIDSDAHVLNTDGQVIDGLYAAGEVAGGIHAGNRLGGNSLSDIFTFGRIAAA HAVAEHVDPVTA
Specific function: Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to tr
COG id: COG0431
COG function: function code R; Predicted flavoprotein
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Escherichia coli, GI1790149, Length=180, Percent_Identity=35, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71986328, Length=412, Percent_Identity=31.3106796116505, Blast_Score=169, Evalue=8e-42, Organism=Saccharomyces cerevisiae, GI6322511, Length=530, Percent_Identity=24.9056603773585, Blast_Score=134, Evalue=5e-32, Organism=Saccharomyces cerevisiae, GI6320788, Length=397, Percent_Identity=28.2115869017632, Blast_Score=112, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 - InterPro: IPR012286 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 87233; Mature: 87233
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFVGIVGTNAQHSYNRMLLEFMQRHFATQAEIEILELTDVPMFDESNDQTDSTIIQNFA CEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH TKIATADGVIIASPEHNHSVPSALKSIIEWLSFKIHPLDGQAVMIVGASYSVQGSSRAQL HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCEEEEECCCCEEEEEECCEEECCCCHHHH HLRQILDAPGVNASVMPGSEFLLGRAQTAFDDQGNLKVQGTVDFLDSCFAKFQKFATIVA HHHHHHCCCCCCCEECCCCHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH EMRAPEALSFAPGTYQVTATGHNGELPMRVTLSADRIENIEIDTSSETQGIADVAFERIP HHCCCCCEEECCCEEEEEEECCCCCCCEEEEEECCCCCCEEECCCCCCCCHHHHHHHHCC KEIIAGQTLAVDAISGASITSHGVIDGVARAVKEAGANPDDLKKRRATKQVAQPAVKEVT HHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC TDVVVVGAGGAGMTAAAKVLQAGHQAVVLEKFPAVGGNTVRAGGPMNAADPDWQRQFAAL CCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHCC PGEKQTLKDLSERDESTIAPEYRADFRKLKQQIDAYLTANTNQKGTLFDSTLLHRIQTYL CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHH GGQRTDLNGQEIHGQYDLVKELTDNALDSVKWLQSIGVKFDESQVTMPVGAIWRRGHKPM CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCEECCHHHHHHCCCCCC GDLGFAYIKTLRAFVEQQGGTIMTETPVKELLVTDGQVRGVIATNAAHEKVIVHADAVIL HHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEEECCCCCEEEEEECEEEE ASGGFAANTKMLQKYNTYWTAIDDDVKTTNSPAMTGDGIRLGTSVGAALVGMGFSQMMPV ECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHCCHHHCCCC SDPETGELFSGLQVPPANFVMVNQQGKRFVNEYGSRDELTQAAIDNGSLFYLIADDEIKK CCCCCHHHHCCCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCHHH TAYNTTQAKIDQQVANGTLFRADTLTDLAQQIGMDPAALTKTIADYNRYVDAGEDPEFHK HHCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHH TAFDLKVAVAPFYATPRKPATHHTMGGLKIDSDAHVLNTDGQVIDGLYAAGEVAGGIHAG HHEEEEEEEEECCCCCCCCCCCCCCCCEEECCCCEEECCCCHHHHHHHHHHHHCCCCCCC NRLGGNSLSDIFTFGRIAAAHAVAEHVDPVTA CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKFVGIVGTNAQHSYNRMLLEFMQRHFATQAEIEILELTDVPMFDESNDQTDSTIIQNFA CEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH TKIATADGVIIASPEHNHSVPSALKSIIEWLSFKIHPLDGQAVMIVGASYSVQGSSRAQL HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCEEEEECCCCEEEEEECCEEECCCCHHHH HLRQILDAPGVNASVMPGSEFLLGRAQTAFDDQGNLKVQGTVDFLDSCFAKFQKFATIVA HHHHHHCCCCCCCEECCCCHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH EMRAPEALSFAPGTYQVTATGHNGELPMRVTLSADRIENIEIDTSSETQGIADVAFERIP HHCCCCCEEECCCEEEEEEECCCCCCCEEEEEECCCCCCEEECCCCCCCCHHHHHHHHCC KEIIAGQTLAVDAISGASITSHGVIDGVARAVKEAGANPDDLKKRRATKQVAQPAVKEVT HHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC TDVVVVGAGGAGMTAAAKVLQAGHQAVVLEKFPAVGGNTVRAGGPMNAADPDWQRQFAAL CCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHCC PGEKQTLKDLSERDESTIAPEYRADFRKLKQQIDAYLTANTNQKGTLFDSTLLHRIQTYL CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHH GGQRTDLNGQEIHGQYDLVKELTDNALDSVKWLQSIGVKFDESQVTMPVGAIWRRGHKPM CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCEECCHHHHHHCCCCCC GDLGFAYIKTLRAFVEQQGGTIMTETPVKELLVTDGQVRGVIATNAAHEKVIVHADAVIL HHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEEECCCCCEEEEEECEEEE ASGGFAANTKMLQKYNTYWTAIDDDVKTTNSPAMTGDGIRLGTSVGAALVGMGFSQMMPV ECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHCCHHHCCCC SDPETGELFSGLQVPPANFVMVNQQGKRFVNEYGSRDELTQAAIDNGSLFYLIADDEIKK CCCCCHHHHCCCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCHHH TAYNTTQAKIDQQVANGTLFRADTLTDLAQQIGMDPAALTKTIADYNRYVDAGEDPEFHK HHCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHH TAFDLKVAVAPFYATPRKPATHHTMGGLKIDSDAHVLNTDGQVIDGLYAAGEVAGGIHAG HHEEEEEEEEECCCCCCCCCCCCCCCCEEECCCCEEECCCCHHHHHHHHHHHHCCCCCCC NRLGGNSLSDIFTFGRIAAAHAVAEHVDPVTA CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11425747; 12368813; 10581551 [H]