Click here to switch to the map view.

The map label for this gene is 28378039

Identifier: 28378039

GI number: 28378039

Start: 1161965

End: 1163020

Strand: Direct

Name: 28378039

Synonym: lp_1277

Alternate gene names: NA

Gene position: 1161965-1163020 (Clockwise)

Preceding gene: 28378038

Following gene: 28378040

Centisome position: 35.12

GC content: 44.13

Gene sequence:

>1056_bases
ATGACAAGAAAAAATATCTGGTCATTACTCGTAATGGTTGCGTTAGGCGTCGGCATTTCGTGGTACTCACTGCGCAATGT
CAAACTAAGCAATCTAATGGACGATATTCTCACTTTGAATTGGTGGTGGTTATTAGTTGCGTTAGGGTGTGTCGGACTAT
ACTTCGGTCTGGAAGCCGTGGTGGTGCAAAAGTTTGTCAGGCACCGTTATCGGAACTATCGCTTTAAGAGTGCCCTGCGC
GTTCCTTTAGCCGAGCAACTATTCAACGGTATCACCCCGTTTTCTTCGGGTGGCCAACCTGCCCAAATCTTCGTGATGGC
ACAATCAGGGATTGACGCTGGGCGGGCAAGTTCAGTTGCATTGATGAAGTTTGTTGTTTTTCAGGCCATGGTGGTATTGA
ATTTCTTATTCGCCATGTTAATTGGTTTTCATTACTTAGCTGAAAAGTTAAGTTACCTGTCACTATACGTTTTGTTAGGT
TTTCTGATTCACTTTGCGGTGATTGTTGGTCTGTTGCTGGTGATGTACTGGTATAACTTTACAAAACGAGCAGTGAAGAT
CGTCTTGATCCCGGTCAGCTGGTTTATGAAAGCTGAGCGATTTGCCAAGTTTGAAAACAATATTAGTGAAAAAATCGATT
CGTTCTACGAAGAAAGCGTTCGAATGACCAAGGACTGGCGGATGCTGGTCGAAGTTTGTATCGTCACCTTCTTACAGCTA
CTGTTTTACTACCTGATTCCGTATTTTATTATGCGGGCAATGGGAATCGATGATGTTAATTTGATTATGGTGACTAGTTT
GAACGTGTTGATCTTCTTAGTGACATCACTATTCCCGATTCCAGGTGGGGCCGGTGGTGCTGAATTTGGTTTCACGGCGT
TGTTTGCTAAGTTCATTCCCAGCCACAGTAAGCTGATTTTAGCGATGCTGATCTGGCGGATCTTAACGTATTATTTAGGA
CTATTCTTAGGGATGATCGCCATGGCGATGCGGCCTGAAAAAGCAGAAGAAATTCCGATTGCGGCACCTAGCCGGTCGGA
TTCACAAGAACAGTAA

Upstream 100 bases:

>100_bases
GCATGACAAGGCGGTTTTGGCTGCTCAGGATTAGTCGGAAGAGCGCCTTGCCAAAGTTTGGCATGATTTTTATTTGCAAC
AGGCAAAAGAGGGGTAGTCA

Downstream 100 bases:

>100_bases
TTTTAATGGGCCGACATCATTGTTCGACCCATTTTTCGCGGTTACGAATTAAAGGAAGGTACTATGTTAAAGTTAATCAA
ACAACGGTTGGTATGGGGAC

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MTRKNIWSLLVMVALGVGISWYSLRNVKLSNLMDDILTLNWWWLLVALGCVGLYFGLEAVVVQKFVRHRYRNYRFKSALR
VPLAEQLFNGITPFSSGGQPAQIFVMAQSGIDAGRASSVALMKFVVFQAMVVLNFLFAMLIGFHYLAEKLSYLSLYVLLG
FLIHFAVIVGLLLVMYWYNFTKRAVKIVLIPVSWFMKAERFAKFENNISEKIDSFYEESVRMTKDWRMLVEVCIVTFLQL
LFYYLIPYFIMRAMGIDDVNLIMVTSLNVLIFLVTSLFPIPGGAGGAEFGFTALFAKFIPSHSKLILAMLIWRILTYYLG
LFLGMIAMAMRPEKAEEIPIAAPSRSDSQEQ

Sequences:

>Translated_351_residues
MTRKNIWSLLVMVALGVGISWYSLRNVKLSNLMDDILTLNWWWLLVALGCVGLYFGLEAVVVQKFVRHRYRNYRFKSALR
VPLAEQLFNGITPFSSGGQPAQIFVMAQSGIDAGRASSVALMKFVVFQAMVVLNFLFAMLIGFHYLAEKLSYLSLYVLLG
FLIHFAVIVGLLLVMYWYNFTKRAVKIVLIPVSWFMKAERFAKFENNISEKIDSFYEESVRMTKDWRMLVEVCIVTFLQL
LFYYLIPYFIMRAMGIDDVNLIMVTSLNVLIFLVTSLFPIPGGAGGAEFGFTALFAKFIPSHSKLILAMLIWRILTYYLG
LFLGMIAMAMRPEKAEEIPIAAPSRSDSQEQ
>Mature_350_residues
TRKNIWSLLVMVALGVGISWYSLRNVKLSNLMDDILTLNWWWLLVALGCVGLYFGLEAVVVQKFVRHRYRNYRFKSALRV
PLAEQLFNGITPFSSGGQPAQIFVMAQSGIDAGRASSVALMKFVVFQAMVVLNFLFAMLIGFHYLAEKLSYLSLYVLLGF
LIHFAVIVGLLLVMYWYNFTKRAVKIVLIPVSWFMKAERFAKFENNISEKIDSFYEESVRMTKDWRMLVEVCIVTFLQLL
FYYLIPYFIMRAMGIDDVNLIMVTSLNVLIFLVTSLFPIPGGAGGAEFGFTALFAKFIPSHSKLILAMLIWRILTYYLGL
FLGMIAMAMRPEKAEEIPIAAPSRSDSQEQ

Specific function: Unknown

COG id: COG0392

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0104 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022791
- InterPro:   IPR005242 [H]

Pfam domain/function: PF03706 UPF0104 [H]

EC number: NA

Molecular weight: Translated: 40095; Mature: 39963

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRKNIWSLLVMVALGVGISWYSLRNVKLSNLMDDILTLNWWWLLVALGCVGLYFGLEAV
CHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]